mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4335640 = | 171 (1.130) | 4 (0.030) | 3/494 | NT | 2.5% | intergenic (‑50/+54) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| ? | NC_000913 | 4335670 = | 150 (1.050) | intergenic (‑80/+24) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | 4225888 = | 192 (1.270) | 3 (0.020) | 3/512 | NT | 1.7% | coding (2061/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913 | 4227007 = | 159 (1.070) | coding (3180/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913 | 3622015 = | 0 (0.000) | 3 (0.020) | 3/512 | NT | 2.6% | coding (2824/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765561 = | 223 (1.500) | coding (3379/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3484544 = | 169 (1.120) | 3 (0.020) | 3/502 | NT | 1.8% | coding (55/870 nt) | prkB | putative phosphoribulokinase |
| ? | NC_000913 | = 3484540 | 162 (1.110) | coding (51/870 nt) | prkB | putative phosphoribulokinase | |||||
| * | ? | NC_000913 | 3156579 = | 148 (0.980) | 3 (0.020) | 3/500 | NT | 2.2% | intergenic (+61/‑44) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| ? | NC_000913 | 3156603 = | 124 (0.860) | intergenic (+85/‑20) | yqhD/dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A | |||||
| * | ? | NC_000913 | = 2943600 | 145 (0.960) | 4 (0.030) | 3/506 | NT | 2.7% | coding (264/1206 nt) | csdA | cysteine sulfinate desulfinase |
| ? | NC_000913 | = 2943639 | 143 (0.980) | coding (303/1206 nt) | csdA | cysteine sulfinate desulfinase | |||||
| * | ? | NC_000913 | 2765420 = | 116 (0.770) | 3 (0.020) | 3/434 | NT | 2.8% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 112 (0.890) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 895642 = | 178 (1.180) | 3 (0.020) | 3/508 | NT | 1.7% | coding (652/1134 nt) | potG | putrescine ABC transporter ATPase |
| ? | NC_000913 | 895887 = | 165 (1.120) | coding (897/1134 nt) | potG | putrescine ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 696741 | 120 (0.790) | 4 (0.040) | 4/366 | NT | 4.0% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 107 (1.010) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 641354 | 103 (0.680) | 3 (0.020) | 3/508 | NT | 2.9% | intergenic (+36/+85) | ahpF/uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| ? | NC_000913 | = 641366 | 103 (0.700) | intergenic (+48/+73) | ahpF/uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 | |||||