Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)62 (1.530) 44/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)65 (1.600) 35/284 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 115 total aligned reads displayed.

CAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979345‑1979628
                                                                                                                                             |                                                                                                                                              
gggggtaatgcctttaatggggaagagactgtctaaataggctgattcaaggcatttacgggagaaaaactcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                               >  2:544871‑M1/142‑143 (MQ=255)
ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacgttccCt                                                                                                                                               <  1:503939‑M1/2‑1 (MQ=255)
 aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCACACACCAAACTa                                                                                                                                              >  2:384100/1‑143 (MQ=255)
  ggataccgccgtaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  2:497580‑M1/140‑143 (MQ=255)
  ggataacgccttaaatggcgcagaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  1:88099‑M1/140‑143 (MQ=255)
  ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  2:110171‑M1/140‑143 (MQ=255)
  ggacaacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  1:411888‑M1/140‑143 (MQ=255)
   gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                            <  2:520716‑M1/5‑1 (MQ=255)
    ataacgccttaaatggcgaagaaacggtgtaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                           >  1:22886‑M1/138‑143 (MQ=255)
    ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                           >  2:312287‑M1/138‑143 (MQ=255)
       accacttaaaacacgaagaaacgggctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                        >  1:192942‑M1/135‑143 (MQ=255)
         gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                      <  1:48184‑M1/11‑1 (MQ=255)
              taataatcGAAATGGGACGTTGCGCACAGTCAAAATAACTCACCGTAAATACTCATCTGCTATCAATCTTCGCTTCCACCCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                 <  1:614863‑M1/142‑13 (MQ=255)
                 taatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacac                                                                                                                              >  1:437261‑M1/1‑128 (MQ=255)
                 taatCGAAAGGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                              <  1:306741‑M1/143‑16 (MQ=255)
                      gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagacac                                                                                                                         >  2:303634‑M1/1‑123 (MQ=255)
                       agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTCATTAAATACACAGAAAGGcaac                                                                                                                        <  2:717887‑M1/25‑1 (MQ=255)
                        gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaaca                                                                                                                       <  1:233428‑M1/26‑1 (MQ=255)
                        aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctg                                                                                                                       >  2:256292‑M1/1‑121 (MQ=255)
                             ggtctaactaggctgatgcagggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                  >  2:628651‑M1/113‑143 (MQ=255)
                             ggtctaaataggctggtgcagggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATGAAATACAAAGAAAGGCAACAATCaa                                                                                                                  >  2:284601‑M1/113‑143 (MQ=255)
                             agcctatataggctgattcaaggcatttacgggagaaagaagcggctgaaaaatgaacaaatgaaatgactgagtcagccgataagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                  >  2:553674‑M1/113‑143 (MQ=255)
                              gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                                 <  1:86825‑M1/32‑1 (MQ=255)
                                gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                               <  1:394434‑M1/143‑31 (MQ=255)
                                  tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAACAATCACTTTCATGCAATACCAGATAAGCTATTGTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                             <  1:695448‑M1/143‑33 (MQ=255)
                                  tGCGCACAGTCAAAAGAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                             <  1:641698‑M1/143‑33 (MQ=255)
                                      aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                                                                                                         >  1:621902‑M1/104‑143 (MQ=255)
                                        caGTCAAAATACCTCACCGTAAATAATCATCTGCTATAAATAATCACGTTCATGCAATACCAGATAAGCTATTGTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                       <  2:193319‑M1/143‑39 (MQ=255)
                                        caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                       <  2:560903‑M1/143‑39 (MQ=255)
                                         ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                      <  1:517270‑M1/43‑1 (MQ=255)
                                          tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaatg                                                                                                     <  1:10652‑M1/44‑1 (MQ=255)
                                           tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaagaagtccctgatatgagatcatgtttgtc                                                                                                    >  1:693938‑M1/1‑102 (MQ=255)
                                           tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTGAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                                                                    >  1:678330‑M1/1‑102 (MQ=255)
                                             ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                  <  1:590199‑M1/47‑1 (MQ=255)
                                              aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                 >  1:709272‑M1/1‑99 (MQ=255)
                                                 aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAGGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                              >  1:499530‑M1/93‑143 (MQ=255)
                                                  cacTCACCGTAAATAATCAGCTGCTATAAATAAGCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                             <  2:112783‑M1/142‑49 (MQ=255)
                                                    cccacCGTAAATAATCATCTGCTATAAATAATCCCTTTCCTGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                                                                           <  2:311515‑M1/141‑51 (MQ=255)
                                                    catttacgggagaaaaaagcggctcaaacatgaaacaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                           >  2:390845‑M1/90‑143 (MQ=255)
                                                     atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCTTCAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                          >  2:89442‑M1/89‑143 (MQ=255)
                                                             gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                          <  2:225701‑M1/55‑1 (MQ=255)
                                                             gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                          >  1:225701‑M1/81‑135 (MQ=255)
                                                               taatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                <  1:449762‑M1/143‑62 (MQ=255)
                                                                 atcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggcgccatagaccagggt                                                                              >  1:129378‑M1/1‑80 (MQ=255)
                                                                      tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGt                                                                         >  2:326424‑M1/72‑143 (MQ=255)
                                                                      cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                         <  2:366726‑M1/143‑69 (MQ=255)
                                                                       tGCTATAAATAATCACTTTCATGCAATACCCGATCAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagatgcgaacaagtccccnatctgagatcatgtttgccatctgcagccatagcacatggtccacca                                                                        >  2:67943‑M1/1‑74 (MQ=255)
                                                                       cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGtt                                                                        >  1:64853‑M1/71‑143 (MQ=255)
                                                                          tataAATAGTCCCTTTCTTGCAATACCAGATAAGGTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccacagaacagggttcatcatga                                                                     <  2:55053‑M1/143‑73 (MQ=255)
                                                                          tataAATAATCACTTTCATTCAATACCAGATAAGCTATTGTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                     <  2:383331‑M1/143‑73 (MQ=255)
                                                                          ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTATATATATATTAACCACTTGATTaa                                                                     <  2:346539‑M1/76‑1 (MQ=255)
                                                                           tcaaacctgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                    >  1:292215‑M1/67‑143 (MQ=255)
                                                                           tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                    <  1:375487‑M1/77‑1 (MQ=255)
                                                                           tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                    <  2:297945‑M1/77‑1 (MQ=255)
                                                                           tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                    <  2:138914‑M1/77‑1 (MQ=255)
                                                                             aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctcccCTAATTAAATACAAAGAAAGGCACCAATCAACATAATGTTACTGAAATGTTTTACATATAATAACCACTTGTTTAATGc                                                                  <  2:4242‑M1/79‑1 (MQ=255)
                                                                               acgtgcagcaacgacatgactgaggcagctgagaagactttccccgcttagtagctccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAAGGAAATGTTTTACATATATTAACCACTTGTTTAATGCgg                                                                >  2:328001‑M1/63‑143 (MQ=255)
                                                                                   tCACTTTCATGCAATAACATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                            <  1:267996‑M1/143‑82 (MQ=255)
                                                                                    cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgcacaagtccctgatatgagatcatgtttgtcatctggcgccatagaacagcgtctctcatgagccatgcact                                                           >  1:608550‑M1/1‑61 (MQ=255)
                                                                                    aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                           >  2:329151‑M1/58‑143 (MQ=255)
                                                                                     agaaatgaaatgactgagtcagccgagaagaatttccccgcttattctcaccttccCTCGTTCAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                          >  2:547671‑M1/57‑143 (MQ=255)
                                                                                     agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                          <  1:692464‑M1/87‑1 (MQ=255)
                                                                                      gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                         >  1:520716‑M1/56‑143 (MQ=255)
                                                                                       tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                        >  1:284752‑M1/1‑58 (MQ=255)
                                                                                         atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACACAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCACTCGTTCAATGCGGCGTCTCAGTa                                                      <  1:300102‑M1/91‑1 (MQ=255)
                                                                                          tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTac                                                     <  1:468481‑M1/92‑1 (MQ=255)
                                                                                           gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGTCAACAATCAACTTAATGTTAATGAGATGTTTTACAGATATTAACCACTTGTTTAATGCGGAGAATCAGTaca                                                    >  1:554853‑M1/51‑143 (MQ=255)
                                                                                           aagcaAAACCAGATAAGCTATGTTTAAACAGACACTTACCGCCCACCAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                    <  1:651584‑M1/141‑90 (MQ=255)
                                                                                           aTGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                    <  1:506178‑M1/143‑90 (MQ=255)
                                                                                                 tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                              <  1:389973‑M1/143‑96 (MQ=255)
                                                                                                  aCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgcca                                             >  1:584862‑M1/1‑47 (MQ=255)
                                                                                                   agagtcagccgagaagaattgccccgcttgttcgcaccttccCTAATGAATGACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                            >  2:288621‑M1/43‑143 (MQ=255)
                                                                                                        tAAGCTATTTTTAAACAGACACTTACCGCACACCAAACCAAggaatgtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat                                       <  1:134004‑M1/143‑103 (MQ=255)
                                                                                                             gagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAAGCAACAATCAACTTAATGTTAATGAAATGGCTCACATATATTAACCACTTCTTTAATGCGCAGAATCAGTACCCTATTTCCTTAcaatcac                                  <  1:271119‑M1/111‑4 (MQ=255)
                                                                                                              agaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACa                                 >  1:138914‑M1/32‑143 (MQ=255)
                                                                                                                aagaagttccccgcttattcgcaccttctCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt                               >  2:460243‑M1/30‑143 (MQ=255)
                                                                                                                  gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                             >  2:224022‑M1/28‑143 (MQ=255)
                                                                                                                   aatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGa                            <  1:280220‑M1/117‑1 (MQ=255)
                                                                                                                      aCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagagaattcagcagtaagcgc                         >  1:658446‑M1/1‑27 (MQ=255)
                                                                                                                         cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                      <  1:373321‑M1/123‑1 (MQ=255)
                                                                                                                         cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                      <  1:265589‑M1/123‑1 (MQ=255)
                                                                                                                            gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                   <  1:520117‑M1/126‑1 (MQ=255)
                                                                                                                               tACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagcacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc                >  1:204249‑M1/1‑18 (MQ=255)
                                                                                                                                attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCa               <  1:333236‑M1/130‑1 (MQ=255)
                                                                                                                                    gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGACCACCgg           <  1:476651‑M1/134‑1 (MQ=255)
                                                                                                                                     caccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCggg          <  1:447249‑M1/135‑1 (MQ=255)
                                                                                                                                      accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAGCAGTAATATCTTCACATAGAATTACATTTAAAATTATATGATCCCcgggc         <  2:150763‑M1/136‑2 (MQ=255)
                                                                                                                                       aagaaactaAagaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga        <  2:479816‑M1/140‑134 (MQ=255)
                                                                                                                                           aaCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtcagcgccgtcagaccagaaaagagatg    >  2:91439‑M1/1‑6 (MQ=255)
                                                                                                                                            cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAGTTATATGATCACCGGGAGTGAtt   <  2:728423‑M1/142‑1 (MQ=255)
                                                                                                                                            cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAtt   >  1:106953‑M1/2‑143 (MQ=255)
                                                                                                                                            aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggggtcatcatgagtcatcaacttaccttcgccgacagtgaattcagcaggaagcgccgtcagaccagcaaagagagca   >  2:578465‑M1/1‑5 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgcacaagtccctgctctgagctcatgtttgtcatctggagccatagaaaagaaataataatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  >  1:282645‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcctcctgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  <  1:654505‑M1/143‑140 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  >  1:571464‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  >  1:372336‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcagacagggaattcagcactcaccgtcgtgacagcagaaaagagatttt  >  1:270233‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcctgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagcaaagagatttt  >  1:678397‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaacttaccttcgataaacgcgaataccgcagtaagcgccgtcagaccggaaacgagatata  >  2:80806‑M1/1‑4 (MQ=255)
                                                                                                                                             cTAAgcaagctgcgaacaagtccctgctatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  <  1:343161‑M1/143‑140 (MQ=255)
                                                                                                                                             |                                                                                                                                              
CAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979345‑1979628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.