Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)62 (1.530) 44/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)65 (1.600) 35/284 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289973‑2290253
                                                                                                                                            |                                                                                                                                            
aGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGCCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATGTCGGGGCGTTGTCCGCACCTTCCAt                                                                                                                                            >  2:431952/1‑143 (MQ=11)
 gcaactctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTCTGGCTCCAGATGACAAACATGCTCCCATATCAGGGACTTGTTCGCACCTTCCaga                                                                                                                                           >  2:127415/6‑141 (MQ=11)
     aTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCGCCAGATGACAAACATGATCTTATATCAGGGACTGGTTGGCACCTGCCagagacg                                                                                                                                       >  2:296415/1‑137 (MQ=1)
        tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTAACTACACGCGTAGGTTAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGt                                                                                                                                    <  2:320206/143‑1 (MQ=11)
         ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                                   <  1:588527/143‑1 (MQ=38)
             tCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGGCAAACATGATCTCATATCAGGGACCTGTTCGCACCTGCCAGCACGCTGTAGcac                                                                                                                               >  2:212743/1‑141 (MQ=11)
              cTGGTCTGACGGTGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCCCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccac                                                                                                                              <  2:232814/143‑1 (MQ=255)
              cTGGTCTGACGGCGCTTACTGCTGAATTCACTGCCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTGGccac                                                                                                                              <  1:668888/143‑1 (MQ=255)
                        ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAgct                                                                                                                    >  1:336677/1‑141 (MQ=255)
                        ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGat                                                                                                                    <  1:581491/143‑1 (MQ=255)
                             ttACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGc                                                                                                               <  1:488208/143‑1 (MQ=255)
                              tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                              >  2:448977/1‑143 (MQ=255)
                                      aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACa                                                                                                      >  1:423527/1‑143 (MQ=255)
                                        ttCACTGTCGGCGAAGGTAGGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                    <  1:353385/143‑1 (MQ=255)
                                        ttCACTGGCGGCGAAGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                    <  2:375031/143‑1 (MQ=255)
                                             tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaa                                                                                               >  2:56739/1‑143 (MQ=255)
                                                   cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa                                                                                         <  1:52560/143‑1 (MQ=255)
                                                     aaGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAAcc                                                                                       >  2:63762/1‑143 (MQ=255)
                                                          aaGTTGATGCCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAtt                                                                                  <  2:530699/143‑1 (MQ=255)
                                                            gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGa                                                                                <  1:100529/143‑1 (MQ=255)
                                                             ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                               >  1:618312/1‑143 (MQ=255)
                                                                atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa                                                                            <  2:281553/143‑1 (MQ=255)
                                                                 tgaCTCATGATGAACCCTGTTATATGGCTCCAGATGACAAACATGATCTCATGTCAGAGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGACCAGCTATTGCGGACCGACAACGACACACAGCACAAGAGTTAGGCAt                                                                           >  2:653723/1‑143 (MQ=18)
                                                                  ttcTCATGATGATCTTTGTTTTATGGCTCTAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAtt                                                                          <  2:346171/141‑1 (MQ=37)
                                                                       atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCt                                                                     >  2:253524/1‑143 (MQ=255)
                                                                        tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATACCGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGCACCGGAGTGATGCATTGAGCtt                                                                    >  2:286068/1‑143 (MQ=255)
                                                                         gatgaACCCTGTTCTATGGCTCCAGATGACACACATGATCTCATATCAGGCACTTGTTCGCACCTTCCCTAACGCTGTAGCCACCACAACACACATTCCGGAACGACAACGAGAAACAGAACCAGCCTCATCCATTGCGCttt                                                                   >  2:303644/1‑143 (MQ=18)
                                                                         gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGGACGACACAGAGACACACAACCAGATTGATGCATTGAGCttt                                                                   >  1:202467/1‑143 (MQ=255)
                                                                         gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGACTGATGCAGCGAGCttt                                                                   >  1:21243/1‑143 (MQ=255)
                                                                          atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTc                                                                  <  1:228069/143‑1 (MQ=255)
                                                                                      cTATGGCTCCAGATGACAAACATGATCGCATATAAGGGACTTGTTCGCACCTTCCATAACGCTGTAGACACCAGAACAGATATTCCGGAACGACAAAGAGAAACAGAACTCGAGTAATGCATTCAGAAATCATCCTAGGaaag                                                      >  2:408714/1‑142 (MQ=21)
                                                                                            cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                <  1:56739/143‑1 (MQ=255)
                                                                                              acacacaaCAACCACGAACCCACATCAGCGACTTGTCCGCCCCTGCCAGAACGCTGTAGCCACCAGAAAAGACATTGCGGAACGACAAAGAGAAACAGAACCAGATTGACGCACTGAGCTTTCATCCTATGAAATTAATTGCt                                              <  2:384305/136‑1 (MQ=255)
                                                                                               cagaacaCAAACCTGATCGCATAGCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTg                                             <  1:267164/137‑1 (MQ=255)
                                                                                                aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGt                                            <  2:362188/143‑1 (MQ=255)
                                                                                                    gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa                                        <  1:714578/143‑1 (MQ=255)
                                                                                                     aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACTCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                       <  1:607461/143‑1 (MQ=255)
                                                                                                     aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                       <  1:63762/143‑1 (MQ=255)
                                                                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAGGCTGTAGACACGAGAAGAGATATTGCGGAACGACACAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCATATGAAAGTAATTGCTGTTAAGAGc                                     >  1:506707/1‑143 (MQ=38)
                                                                                                          cATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                                  >  1:253054/1‑143 (MQ=255)
                                                                                                                    tatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAgca                        >  1:297396/1‑141 (MQ=255)
                                                                                                                      tCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGacaa                      >  1:590084/1‑143 (MQ=255)
                                                                                                                         ggcaCTTGTTCGTACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGACAAACAGAACCAGATTCATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc                   <  2:40018/140‑1 (MQ=255)
                                                                                                                          ggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAcc                  >  2:106010/1‑143 (MQ=255)
                                                                                                                              ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATa              >  1:367333/1‑143 (MQ=255)
                                                                                                                                   cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGATAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTTTGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTcc         <  1:118561/143‑1 (MQ=255)
                                                                                                                                    gCACCTTCCATTACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa        <  1:448977/143‑1 (MQ=255)
                                                                                                                                       ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATAc     >  2:461983/1‑143 (MQ=255)
                                                                                                                                       ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTCAAACGCACTGGTTGCGGAAAATACCCATAGCTCCATAc     >  1:195769/1‑143 (MQ=255)
                                                                                                                                         ttCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGATCGACAAAGAGTAACCGAACCAGATTGATGCATTGAGCTTTCAGCCTATGAAATTAATTGCTGTTGAATGCATTGGGTACAGAAAATACCCATAGCTCCATAccc   <  2:637263/143‑1 (MQ=255)
                                                                                                                                          tCCAGAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGCGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCg  <  2:394729/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCG  >  NC_000913/2289973‑2290253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.