Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,411,925 Δ23,060 bp [ttcA][ttcC] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1411925 1434984 23060 58 [0] [1] 59 [ttcA]–[ttcC] [ttcA],intR,ydaQ,ydaC,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,tmpR,lomR,insH1,lomR,stfR,tfaR,pinR,ynaE,[ttcC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14119240 (0.000)46 (1.190) 42/232 0.0 100% coding (25/936 nt) ttcA tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
?NC_000913 1434985 = 0 (0.000)pseudogene (24/51 nt) ttcC pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related

GCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACC  >  NC_000913/1411783‑1412062
                                                                                                                                             |                                                                                                                                          
gCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTa                                                                                                                                           <  1:370364‑M1/143‑2 (MQ=255)
 cATCGTCTAGCTGTCTCGTCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTac                                                                                                                                          <  2:686583‑M1/143‑3 (MQ=255)
  aTGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTTTTact                                                                                                                                         >  1:449256‑M1/1‑140 (MQ=255)
     gTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaat                                                                                                                                      <  2:762658‑M1/143‑7 (MQ=255)
      tataGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGGTCAGGTTGTATTGTTCTTTCTTactaatt                                                                                                                                     >  1:342673‑M1/1‑136 (MQ=255)
        taGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttc                                                                                                                                   <  1:297576‑M1/143‑10 (MQ=255)
                 ttACCCCCGGAGAGGCAAACCCTGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGTCGCAGTCGTTTTTGTATTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttg                                                                                                                          <  2:847337‑M1/143‑19 (MQ=255)
                 gtaCTCCCGTAGAGGCAAACCATGATGCGGTCGCCTTCTTCGATCGTAGTGAAGTCAGCTATGGCTTCGCCCACGTTACGACGCAGTCGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttg                                                                                                                          <  2:789974‑M1/142‑19 (MQ=255)
                   aCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGCAGAAGACTTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcg                                                                                                                        >  2:98892‑M1/1‑123 (MQ=255)
                       ccGGATAGGCAAACCATGATGCTATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacat                                                                                                                    <  1:48279‑M1/143‑25 (MQ=255)
                           agagGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttac                                                                                                                >  2:170297‑M1/1‑115 (MQ=255)
                               gCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAAGTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagc                                                                                                            >  2:85915‑M1/1‑111 (MQ=255)
                                 aaaCCGTGATGCGATCGCCTTCTTCAAGCATATTGAAGTCAGCAATGGCTTCGGCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga                                                                                                          <  2:398675‑M1/143‑35 (MQ=255)
                                 aaaCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga                                                                                                          >  1:826097‑M1/1‑109 (MQ=255)
                                 aaaCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcga                                                                                                          <  2:756981‑M1/143‑35 (MQ=255)
                                        gatgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGGATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaatt                                                                                                   <  1:613602‑M1/143‑42 (MQ=255)
                                         atgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGAAGTTGTTAATTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactccattc                                                                                                  >  2:836165‑M1/1‑101 (MQ=255)
                                         atgCGATCGCCTTCTTCAATCATATTCAAGTCAGCAATGGCTTCGCCCACGTTACGTCGCAGACGTTTTTGTAATTTGTTCTGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattc                                                                                                  <  2:373083‑M1/143‑43 (MQ=255)
                                          tgCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcg                                                                                                 >  1:649083‑M1/1‑100 (MQ=255)
                                             gATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgtta                                                                                              <  2:174185‑M1/143‑47 (MQ=255)
                                                cGCCTTCTTCAATCCTATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatat                                                                                           <  1:787541‑M1/143‑50 (MQ=255)
                                                   ctttttCAATCATATGAAAATCACCAATAGCTGCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggc                                                                                        <  1:788049‑M1/143‑53 (MQ=255)
                                                   cttcttCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATCGTTCTTTCTTactaatttctagacttaacaacttttaatggcgactcaattcgttatatggc                                                                                        >  1:432293‑M1/1‑91 (MQ=255)
                                                     tcttcAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactactatcttgatctttcgacatttaaaagcgactcaattcgttatcttgcat                                                                                      >  2:376012‑M1/1‑89 (MQ=255)
                                                       ttcAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatca                                                                                    >  1:634535‑M1/1‑87 (MQ=255)
                                                       ttcAACCATATGGAAGTCAGCAAGGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatca                                                                                    <  1:28134‑M1/143‑57 (MQ=255)
                                                          aaTCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaa                                                                                 <  2:155823‑M1/143‑60 (MQ=255)
                                                                 ttGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatg                                                                          >  1:858233‑M1/1‑77 (MQ=255)
                                                                 ttGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagaggatg                                                                          >  2:612856‑M1/1‑77 (MQ=255)
                                                                         aGCTATGGTTTTTCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgc                                                                  <  1:530066‑M1/143‑75 (MQ=255)
                                                                          gCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgcc                                                                 >  2:390485‑M1/1‑68 (MQ=255)
                                                                                  ttCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTGGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatccgacgtttgttcgtcatgccggaacgcc                                                         >  2:555034‑M1/1‑60 (MQ=255)
                                                                                     gCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccag                                                      >  1:514378‑M1/1‑57 (MQ=255)
                                                                                      cccACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagc                                                     >  1:646006‑M1/1‑56 (MQ=255)
                                                                                        cACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatgtcatcagaagagtatgcgtcatgccggaacgcccagcat                                                   >  2:251220‑M1/1‑54 (MQ=255)
                                                                                              acgacgCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaa                                             >  1:806182‑M1/1‑48 (MQ=255)
                                                                                                gccgcaGACGGTTTTGTAATTTGTTCTGGTGTTATTGTTCTTTCTTactaatttcttgtttttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatc                                           <  2:817125‑M1/141‑98 (MQ=255)
                                                                                                         gTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggatcgccgagcctaagaaatctggtataac                                  >  2:491485‑M1/1‑37 (MQ=255)
                                                                                                         gTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcgtgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaa                                  <  1:469437‑M1/143‑107 (MQ=255)
                                                                                                            tttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcagcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaa                               <  1:98892‑M1/143‑110 (MQ=255)
                                                                                                            tttGTAATTGGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaa                               <  1:602961‑M1/143‑110 (MQ=255)
                                                                                                              tgaaatttTTTCAGGTTGGATTGTTCTTTCTTaacaatttcttgattgtgcgacatttaaaagcgcctcacctcgatacaaggcatcagaagagtatgcgtcatgccggagcgcccagcataagaaatctgatataaaaaact                             <  2:517569‑M1/140‑112 (MQ=255)
                                                                                                               gTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactccattcgttatatggcatcaaaagaatatgcgtcatgccggaacgaccagcataagaaatctgatataaaaaactg                            >  1:303220‑M1/1‑31 (MQ=255)
                                                                                                                tAATGTGTTCAGGTTGTATGGTTCTTTCTTactaatttcgtgattttgcgacatttaaaagcgactcaagtcgttatatggcagcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgt                           <  2:55243‑M1/143‑114 (MQ=255)
                                                                                                                 aaTTTGTTCAGGTTGTATTGTTCTTTCTTaataatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtg                          <  2:812595‑M1/143‑115 (MQ=255)
                                                                                                                  aTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtgg                         <  2:826097‑M1/143‑116 (MQ=255)
                                                                                                                     tGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgt                      <  1:746804‑M1/143‑119 (MQ=255)
                                                                                                                          aGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatg                 <  1:792323‑M1/143‑124 (MQ=255)
                                                                                                                            gTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgcaggaccgcccagcgtaagaaatctgataaaaaaacctgtggcgggtatggt               >  2:720803‑M1/1‑18 (MQ=255)
                                                                                                                                 aTTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgcctcaattcgttatatggcatcagaagagtctgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtagggtacgga          >  2:456573‑M1/1‑13 (MQ=255)
                                                                                                                                 aTTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtcgcgtgcatggtacgga          >  2:362500‑M1/1‑13 (MQ=255)
                                                                                                                                  ctgTTCTTACTTactaatttgtggatgcggcgacattgaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggat         <  1:25507‑M1/142‑132 (MQ=255)
                                                                                                                                      tctttcgtactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagaggaggcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattaga     <  1:169038‑M1/143‑136 (MQ=255)
                                                                                                                                       ctttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagag    <  1:85915‑M1/143‑137 (MQ=255)
                                                                                                                                        tttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagagg   >  2:562570‑M1/1‑6 (MQ=255)
                                                                                                                                        tttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggcacggcgtagagg   >  1:705047‑M1/1‑6 (MQ=255)
                                                                                                                                        tttcttactaattgcgtgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagagg   <  2:29880‑M1/143‑138 (MQ=255)
                                                                                                                                         ttcttactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggagcgcccagcataagaaatctgatataaaaaactgtgacgtgtagggtacggattcaaggg  >  2:569456‑M1/1‑5 (MQ=255)
                                                                                                                                             |                                                                                                                                          
GCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACC  >  NC_000913/1411783‑1412062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.