Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,411,925 Δ23,060 bp [ttcA][ttcC] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1411925 1434984 23060 58 [0] [1] 59 [ttcA]–[ttcC] [ttcA],intR,ydaQ,ydaC,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,tmpR,lomR,insH1,lomR,stfR,tfaR,pinR,ynaE,[ttcC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14119240 (0.000)46 (1.190) 42/232 0.0 100% coding (25/936 nt) ttcA tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
?NC_000913 1434985 = 0 (0.000)pseudogene (24/51 nt) ttcC pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related

AAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGG  >  NC_000913/1434843‑1435122
                                                                                                                                              |                                                                                                                                         
gcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttctta                                                                                                                                           <  1:370364‑M2/1‑1 (MQ=255)
 catcgtctagctgtctcgtcccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttAc                                                                                                                                          <  2:686583‑M2/2‑1 (MQ=255)
  atggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttcttttttACt                                                                                                                                         >  1:449256‑M2/141‑143 (MQ=255)
     gtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAAt                                                                                                                                      <  2:762658‑M2/6‑1 (MQ=255)
      tatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttggtcaggttgtattgttctttcttACTAAtt                                                                                                                                     >  1:342673‑M2/137‑143 (MQ=255)
        tagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTc                                                                                                                                   <  1:297576‑M2/9‑1 (MQ=255)
                 ttacccccggagaggcaaaccctgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgtcgcagtcgtttttgtattttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTg                                                                                                                          <  2:847337‑M2/18‑1 (MQ=255)
                 gtactcccgtagaggcaaaccatgatgcggtcgccttcttcgatcgtagtgaagtcagctatggcttcgcccacgttacgacgcagtcgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTg                                                                                                                          <  2:789974‑M2/18‑1 (MQ=255)
                   acccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgcagaagacttttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCg                                                                                                                        >  2:98892‑M2/124‑143 (MQ=255)
                       ccggataggcaaaccatgatgctatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACAt                                                                                                                    <  1:48279‑M2/24‑1 (MQ=255)
                           agaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTtac                                                                                                                >  2:170297‑M2/116‑142 (MQ=255)
                               gcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaagttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGc                                                                                                            >  2:85915‑M2/112‑143 (MQ=255)
                                 aaaccgtgatgcgatcgccttcttcaagcatattgaagtcagcaatggcttcggccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa                                                                                                          <  2:398675‑M2/34‑1 (MQ=255)
                                 aaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa                                                                                                          >  1:826097‑M2/110‑143 (MQ=255)
                                 aaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGa                                                                                                          <  2:756981‑M2/34‑1 (MQ=255)
                                        gatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttggattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAAtt                                                                                                   <  1:613602‑M2/41‑1 (MQ=255)
                                         atgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgaagttgttaattgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTc                                                                                                  >  2:836165‑M2/102‑143 (MQ=255)
                                         atgcgatcgccttcttcaatcatattcaagtcagcaatggcttcgcccacgttacgtcgcagacgtttttgtaatttgttctggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTc                                                                                                  <  2:373083‑M2/42‑1 (MQ=255)
                                          tgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCg                                                                                                 >  1:649083‑M2/101‑143 (MQ=255)
                                             gatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTta                                                                                              <  2:174185‑M2/46‑1 (MQ=255)
                                                cgccttcttcaatcctattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTatat                                                                                           <  1:787541‑M2/49‑1 (MQ=255)
                                                   ctttttcaatcatatgaaaatcaccaatagctgcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGc                                                                                        <  1:788049‑M2/52‑1 (MQ=255)
                                                   cttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtatcgttctttcttACTAATTTCTAGACTTAACAACTTTTAATGGCGACTCAATTCGTTATATGGc                                                                                        >  1:432293‑M2/92‑143 (MQ=255)
                                                     tcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTACTATCTTGATCTTTCGACATTTAAAAGCGACTCAATTCGTTATCTTGCAt                                                                                      >  2:376012‑M2/90‑143 (MQ=255)
                                                       ttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCa                                                                                    >  1:634535‑M2/88‑143 (MQ=255)
                                                       ttcaaccatatggaagtcagcaagggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCa                                                                                    <  1:28134‑M2/56‑1 (MQ=255)
                                                          aatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCagaa                                                                                 <  2:155823‑M2/59‑1 (MQ=255)
                                                                 ttgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATg                                                                          >  1:858233‑M2/78‑143 (MQ=255)
                                                                 ttgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGGATg                                                                          >  2:612856‑M2/78‑143 (MQ=255)
                                                                         agctatggtttttcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGc                                                                  <  1:530066‑M2/74‑1 (MQ=255)
                                                                          gcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGcc                                                                 >  2:390485‑M2/69‑143 (MQ=255)
                                                                                  ttcgcccacgttacgacgcagacgtttttgtaatttgttcaggtggtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCCGACGTTTGTTCGTCATGCCGGAACGcc                                                         >  2:555034‑M2/61‑143 (MQ=255)
                                                                                     gcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAg                                                      >  1:514378‑M2/58‑143 (MQ=255)
                                                                                      cccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGc                                                     >  1:646006‑M2/57‑143 (MQ=255)
                                                                                        cacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGTCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAt                                                   >  2:251220‑M2/55‑143 (MQ=255)
                                                                                              acgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGaaa                                             >  1:806182‑M2/49‑143 (MQ=255)
                                                                                                gccgcagacggttttgtaatttgttctggtgttattgttctttcttACTAATTTCTTGTTTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATc                                           <  2:817125‑M2/97‑1 (MQ=255)
                                                                                                         gtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGATCGCCGAGCCTAAGAAATCTGGTAtaac                                  >  2:491485‑M2/38‑142 (MQ=255)
                                                                                                         gtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCGTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaa                                  <  1:469437‑M2/106‑1 (MQ=255)
                                                                                                            tttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCAGCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaaa                               <  1:98892‑M2/109‑1 (MQ=255)
                                                                                                            tttgtaattggttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaaaa                               <  1:602961‑M2/109‑1 (MQ=255)
                                                                                                              tgaaattttttcaggttggattgttctttcttAACAATTTCTTGATTGTGCGACATTTAAAAGCGCCTCACCTCGATACAAGGCATCAGAAGAGTATGCGTCATGCCGGAGCGCCCAGCATAAGAAATCTGATATAAAAAACt                             <  2:517569‑M2/111‑1 (MQ=255)
                                                                                                               gtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTCGTTATATGGCATCAAAAGAATATGCGTCATGCCGGAACGACCAGCATAAGAAATCTGATATAAAAAACtg                            >  1:303220‑M2/32‑143 (MQ=255)
                                                                                                                taatgtgttcaggttgtatggttctttcttACTAATTTCGTGATTTTGCGACATTTAAAAGCGACTCAAGTCGTTATATGGCAGCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtgt                           <  2:55243‑M2/113‑1 (MQ=255)
                                                                                                                 aatttgttcaggttgtattgttctttcttAATAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACtgtg                          <  2:812595‑M2/114‑1 (MQ=255)
                                                                                                                 aatttGTTCAGTTCGTAGTGGTCCTGCTTACTACTTTCTTGATTTTGCGACATTTATAAGTGACTTCCTTCTTTATAGGGCATCAGAAGCGTGTGCCTCATGCCGTATCGCCCAGTATAAGATATCTGATATAAAAAACtgtg                          <  2:417978/140‑1 (MQ=255)
                                                                                                                  atttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTgg                         <  2:826097‑M2/115‑1 (MQ=255)
                                                                                                                     tgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCgt                      <  1:746804‑M2/118‑1 (MQ=255)
                                                                                                                          aggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATg                 <  1:792323‑M2/123‑1 (MQ=255)
                                                                                                                            gttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCAGGACCGCCCAGCGTAAGAAATCTGATAAAAAAACCTGTGGCGGGTATGGt               >  2:720803‑M2/19‑143 (MQ=255)
                                                                                                                                 attgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGCCTCAATTCGTTATATGGCATCAGAAGAGTCTGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTAGGGTACGGa          >  2:456573‑M2/14‑143 (MQ=255)
                                                                                                                                 attgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTCGCGTGCATGGTACGGa          >  2:362500‑M2/14‑143 (MQ=255)
                                                                                                                                  ctgttcttacttACTAATTTGTGGATGCGGCGACATTGAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAt         <  1:25507‑M2/131‑1 (MQ=255)
                                                                                                                                      tctttcgtACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGGAGGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTaga     <  1:169038‑M2/135‑1 (MQ=255)
                                                                                                                                       ctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTagag    <  1:85915‑M2/136‑1 (MQ=255)
                                                                                                                                        tttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgg   >  2:562570‑M2/7‑143 (MQ=255)
                                                                                                                                        tttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGCACGGCGTAGAgg   >  1:705047‑M2/7‑143 (MQ=255)
                                                                                                                                        tttcttACTAATTGCGTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgg   <  2:29880‑M2/137‑1 (MQ=255)
                                                                                                                                         ttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAGCGCCCAGCATAAGAAATCTGATATAAAAAACTGTGACGTGTAGGGTACGGATTCAAggg  >  2:569456‑M2/6‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                         
AAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGG  >  NC_000913/1434843‑1435122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.