Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 37 [0] [0] 37 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)33 (0.740) 32/268 0.4 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049
                                                                                                                                           |                                                                                                                                              
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTGTATTCGAGAAGGTAagt                                                                                                                                             >  2:426083‑M1/1‑140 (MQ=255)
          gCTAAATTTTGCCAATGTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                   <  2:466789‑M1/143‑14 (MQ=255)
            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTAGATTCGTGAAGGTAagcgcaaagataatc                                                                                                                                 >  2:128643‑M1/1‑128 (MQ=255)
              aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                               <  1:568639‑M1/143‑18 (MQ=255)
                       aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                      >  2:88995‑M1/1‑117 (MQ=255)
                         tgtggGAAGACAGGTGTAGCAGAAGAGGGTATAGCAATGTCGTTAGCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCTTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    <  2:368962‑M1/141‑29 (MQ=255)
                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                       >  1:231284‑M1/1‑102 (MQ=255)
                                          aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtttggatgtatgcg                                                                                                   >  1:758576‑M1/1‑98 (MQ=255)
                                               aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              >  1:697822‑M1/1‑93 (MQ=255)
                                                         aGCAAAGACGTGACCAAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttgcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                                    <  2:780052‑M1/143‑61 (MQ=255)
                                                           cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                                  <  2:459341‑M1/143‑63 (MQ=255)
                                                            aaTGACGCTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCTCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                 <  1:275086‑M1/143‑64 (MQ=255)
                                                                  gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcttgtctggctgtgtgcgtcaacgtgaaaccggcaccggacg                                                                           >  1:247722‑M1/1‑74 (MQ=255)
                                                                   ttACCGAGTGGGCGCCCGAAGAGCAGATTGATCAGAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAggtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                          <  2:333068‑M1/143‑71 (MQ=255)
                                                                     aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggccgtgc                                                                        >  2:640511‑M1/1‑71 (MQ=255)
                                                                       cGAGTGGACACCCGAATAGCAGATTGATCAAAAAATTTTCCGTTTTTCAGTCGGAAATTCGTGCAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      <  1:584367‑M1/143‑75 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACGGCACTAGGCCCGTATATTCGTGAAGGTAagtgcgaagataatcgattctttttcgaaagtctggcggtaagagtaaacgtgaaaacggcaccggaagtgcgt                                                                      >  2:395861‑M1/1‑69 (MQ=255)
                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacgggcaccggaagtgcgtga                                                                    >  2:213138‑M1/1‑67 (MQ=255)
                                                                                acacgaaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                             <  1:805937‑M1/140‑84 (MQ=255)
                                                                                   cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaggataatcgattctttttcgattgtctggctgtatgcgtcaatgtgaaaccagaaccggaagtgcgtgtattctcgggc                                                          >  1:499948‑M1/1‑57 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcggttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                      <  1:200509‑M1/143‑91 (MQ=255)
                                                                                       gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                      <  1:683132‑M1/143‑91 (MQ=255)
                                                                                        agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgagttctggggctggtg                                                     >  1:728135‑M1/1‑52 (MQ=255)
                                                                                           aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                  <  2:632270‑M1/143‑95 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggcgccggaagcgcgtgaattctggggctggtggatggagctgga                                         >  2:176356‑M1/1‑40 (MQ=255)
                                                                                                     aaaaaTTTTCCGCGCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                        <  1:113454‑M1/143‑105 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgtattctggggctggtggatggagctggaa                                        >  1:213035‑M1/1‑39 (MQ=255)
                                                                                                          gttaGCGCACTAGGCCGGTATAGTCGTGAAGGTAagtgcgaagataagcgattctttttcgattgtctggctgtaggcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                   <  2:445610‑M1/142‑110 (MQ=255)
                                                                                                                    tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              >  1:524866‑M1/1‑24 (MQ=255)
                                                                                                                    tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              <  2:524866‑M1/42‑19 (MQ=255)
                                                                                                                          cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggaggatggggctggaagcgcaggaagaccggtttacc                   >  2:329656‑M1/1‑18 (MQ=255)
                                                                                                                                  cGTGAAGGTAagtgcaaagataatcggttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta           <  2:616866‑M1/143‑134 (MQ=255)
                                                                                                                                   gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggctggagctggaagcgcaggcatcccgttttacctacagttac          >  1:802620‑M1/1‑9 (MQ=255)
                                                                                                                                         gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagttt    <  2:480463‑M1/143‑141 (MQ=255)
                                                                                                                                          tAagtggaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg   <  2:247722‑M1/143‑142 (MQ=255)
                                                                                                                                           aagtgcaaagataatcgattctttttcgattgtcttgctgtatgcgtcaacgtgaaaccggaaccggtagtgcgtgaattctggagctggaggatggaggtggaacacgaggaatcccgttttacttgcagataccagtttgg  >  2:236400‑M1/1‑1 (MQ=255)
                                                                                                                                           aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg  <  2:697822‑M1/143‑143 (MQ=255)
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TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: