Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 37 [0] [0] 37 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)33 (0.740) 32/268 0.4 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGG  >  NC_000913/258544‑258825
                                                                                                                                            |                                                                                                                                             
ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtgtattcgagaaggtaAGt                                                                                                                                             >  2:426083‑M2/141‑143 (MQ=255)
          gctaaattttgccaatgtggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa                                                                                                                                   <  2:466789‑M2/13‑1 (MQ=255)
            taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtagattcgtgaaggtaAGCGCAAAGATAATc                                                                                                                                 >  2:128643‑M2/129‑143 (MQ=255)
              aattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGa                                                                                                                               <  1:568639‑M2/17‑1 (MQ=255)
                       aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                      >  2:88995‑M2/118‑143 (MQ=255)
                         tgtgggaagacaggtgtagcagaagagggtatagcaatgtcgttagcgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccttatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                    <  2:368962‑M2/28‑1 (MQ=255)
                                      ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa                                                                                                       >  1:231284‑M2/103‑143 (MQ=255)
                                          atcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTTTGGATGTATGCg                                                                                                   >  1:758576‑M2/99‑143 (MQ=255)
                                               aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                              >  1:697822‑M2/94‑143 (MQ=255)
                                                         agcaaagacgtgaccaagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTGCGATTGTCTGGCTGTATGCGTCAACGTGAAACCgg                                                                                    <  2:780052‑M2/60‑1 (MQ=255)
                                                           caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCa                                                                                  <  2:459341‑M2/62‑1 (MQ=255)
                                                            aatgacgctaccgagtggacacccgaagagcagattgatcaaaaaatttaccgctctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc                                                                                 <  1:275086‑M2/63‑1 (MQ=255)
                                                                  gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTGTGCGTCAACGTGAAACCGGCACCggacg                                                                           >  1:247722‑M2/75‑141 (MQ=255)
                                                                   ttaccgagtgggcgcccgaagagcagattgatcagaaaatttaccgcactaggcccgtatattcgtgaaggtaGGTGCAAAGATAATCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt                                                                          <  2:333068‑M2/70‑1 (MQ=255)
                                                                     accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGCCGTGc                                                                        >  2:640511‑M2/72‑143 (MQ=255)
                                                                       cgagtggacacccgaatagcagattgatcaaaaaattttccgtttttcagtcggaaattcgtgcaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt                                                                      <  1:584367‑M2/74‑1 (MQ=255)
                                                                       cgagtggacacccgaagagcagattgatcaaaaaatttacggcactaggcccgtatattcgtgaaggtaAGTGCGAAGATAATCGATTCTTTTTCGAAAGTCTGGCGGTAAGAGTAAACGTGAAAACGGCACCGGAAGTGCGt                                                                      >  2:395861‑M2/70‑143 (MQ=255)
                                                                         agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACGGGCACCGGAAGTGCGTGa                                                                    >  2:213138‑M2/68‑143 (MQ=255)
                                                                                acacgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgg                                                             <  1:805937‑M2/83‑1 (MQ=255)
                                                                                   cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAGGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAATGTGAAACCAGAACCGGAAGTGCGTGTATTCTCGGGc                                                          >  1:499948‑M2/58‑143 (MQ=255)
                                                                                       gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGGTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                      <  1:200509‑M2/90‑1 (MQ=255)
                                                                                       gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                      <  1:683132‑M2/90‑1 (MQ=255)
                                                                                        agcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAGTTCTGGGGCtggtg                                                     >  1:728135‑M2/53‑143 (MQ=255)
                                                                                           agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                  <  2:632270‑M2/94‑1 (MQ=255)
                                                                                                    aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGACACCGGCGCCGGAAGCGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                         >  2:176356‑M2/41‑143 (MQ=255)
                                                                                                     aaaaattttccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa                                        <  1:113454‑M2/104‑1 (MQ=255)
                                                                                                     aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGTATTCTGGGGCTGGTGGATGGAGCTGGaa                                        >  1:213035‑M2/40‑143 (MQ=255)
                                                                                                          gttagcgcactaggccggtatagtcgtgaaggtaAGTGCGAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                   <  2:445610‑M2/109‑1 (MQ=255)
                                                                                                                    taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                                                                                                              >  1:524866‑M2/25‑42 (MQ=255)
                                                                                                                    taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                                                                                                              <  2:524866‑M2/18‑1 (MQ=255)
                                                                                                                          cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGAGGATGGGGCTGGAAGCGCAGGAAGACCGGTTTAcc                   >  2:329656‑M2/19‑143 (MQ=255)
                                                                                                                                  cgtgaaggtaAGTGCAAAGATAATCGGTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTa           <  2:616866‑M2/133‑1 (MQ=255)
                                                                                                                                   gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGCTGGAGCTGGAAGCGCAGGCATCCCGTTTTACCTACAGTTAc          >  1:802620‑M2/10‑143 (MQ=255)
                                                                                                                                         gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt    <  2:480463‑M2/140‑1 (MQ=255)
                                                                                                                                          taAGTGGAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg   <  2:247722‑M2/141‑1 (MQ=255)
                                                                                                                                           aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTTGCTGTATGCGTCAACGTGAAACCGGAACCGGTAGTGCGTGAATTCTGGAGCTGGAGGATGGAGGTGGAACACGAGGAATCCCGTTTTACTTGCAGATACCAGTTTgg  >  2:236400‑M2/2‑143 (MQ=255)
                                                                                                                                           aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTgg  <  2:697822‑M2/142‑1 (MQ=255)
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CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGG  >  NC_000913/258544‑258825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: