New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	42 (0.860)	7 (0.160)	6/250	5.2	13.4%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	53 (1.230)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGG  >  NC_000913/1207664‑1207941                                                                                                                                              |                                                                                                                                         gggCCAACCTCCAGAAGGGGCCGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                         <  2:858014/141‑1 (MQ=255)    ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGGAGGAGCa                                                                                                                                      >  1:554524/1‑143 (MQ=255)     cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTTGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa                                                                                                                                     <  1:86513/143‑1 (MQ=255)      aGCCTGGAGAAGGGGCGTCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgc                                                                                                                                    <  1:783486/143‑7 (MQ=255)      aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAGTCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                    <  2:592742/143‑1 (MQ=255)              gaAGGGGCGGCACCACCAGTTACTTACCGCACTTCGCGCGCTGCTCTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGCTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAACCTCAATg                                                                                                                            <  1:612421/143‑1 (MQ=18)               aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGACGAGGAAATCTCAATgc                                                                                                                           >  1:549594/1‑143 (MQ=255)                aGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                          <  1:63676/143‑1 (MQ=255)                  gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTATGGGAGAAGGAGCAAAAGTCAATgcagc                                                                                                                        >  2:429312/1‑143 (MQ=255)                    gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                      >  1:775118/1‑143 (MQ=255)                       gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTACATGCAGCCACgg                                                                                                                   >  2:783900/1‑143 (MQ=255)                       gcACGACCAGTTACTTACCGCACTGCGGGCGCTGCTGTTAAGGCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                                   <  2:379098/143‑1 (MQ=255)                                           gaggtCGCGCGTGGCGGGTAAGCCGCAAGACTCCGTGTGGCGATATCAAATCGGATGGCACTGTGCTAACGGCTCTCGAAAACCTTGGTTTGAGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCTGt                                                                                               <  2:850728/139‑1 (MQ=25)                                                 gcgcggTGCTGGGAAGGCGCAAGAATCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                         <  2:557289/143‑1 (MQ=25)                                                   gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGAGCAAAACTCAATGCAGCAAAGGCGACATTAGGACGGAACGGGTTCATacc                                                                                       >  2:579437/1‑141 (MQ=21)                                                           gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                               >  1:510985/1‑143 (MQ=255)                                                                gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTAAATTAGGACGAACCGGTTTCATAGCTATACAGGTCATg                                                                          >  1:293830/1‑143 (MQ=25)                                                                            cGTTTGGCGATATCCAAGCGGATGGCACGGTGCAAACGGCGCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                              <  1:464816/143‑1 (MQ=255)                                                                             gtgtGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACGGCGACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGATTGGTGGTATTg                                                             <  2:188058/140‑1 (MQ=38)                                                                              tgtGGCGATATGAGATCGGATGGCACTGAGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGAGCAAAACGCAATGCAGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                            <  1:179917/141‑1 (MQ=255)                                                                               tgggCGATATCAGATCGGCGGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCCACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                           <  2:145816/141‑1 (MQ=38)                                                                                 ggCGATATCGAAGCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                         <  1:22625/143‑1 (MQ=255)                                                                                   ggATATCAACTGGGGTGGCACGGGGCGAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                       <  2:799090/142‑1 (MQ=38)                                                                                         cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                 <  1:136718/143‑1 (MQ=255)                                                                                            accgtttGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGATAAAAGAAGGAGTAAAGCTAATTTTCTCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                              <  1:605145/137‑1 (MQ=255)                                                                                            aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                              >  2:814503/1‑143 (MQ=255)                                                                                               ggATGGCAGTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTc                                           <  1:579437/143‑1 (MQ=255)                                                                                                gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTcc                                          >  2:519185/1‑142 (MQ=255)                                                                                                   ggCACTGTGCAAGCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                       <  2:358473/143‑1 (MQ=255)                                                                                                     cACTGCGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCGATACCGGTTATGACTGGTGGTATTGAGCAATCAGTAATCACTCAGTggg                                     >  2:738446/1‑143 (MQ=255)                                                                                                      aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGCgggg                                    >  2:427297/1‑143 (MQ=255)                                                                                                            cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGTTGGTGGTATTGTGCAATCAGTAATCATTCCGTGTGGGTGGaa                              >  1:429488/1‑143 (MQ=255)                                                                                                                cagCTCTCGACAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                          <  2:375841/141‑1 (MQ=255)                                                                                                                  cctctGGAGAACCTTCGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                        <  2:114674/142‑1 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCTGTGGGGGTGGAATGCCGCaaaa                    >  1:522293/1‑143 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                    >  1:525112/1‑143 (MQ=255)                                                                                                                      tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTACTGAGCAATCAGTAATCATTCAGTGGGGGGGGAATGCCGCaaaa                    >  2:593479/1‑143 (MQ=255)                                                                                                                      gcGAACACCGTGGTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGCACGCACCGGTTTCATAGCGATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                    <  1:806665/142‑1 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                  >  1:799924/1‑143 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                  <  1:864423/143‑1 (MQ=255)                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGATATACCGGTTATGATTGGTGGTAGTGAGCAATCAATAATCACTCAGCGGGGGTGGAAGCCAGCAAAAGc                  >  2:214593/1‑143 (MQ=255)                                                                                                                              attcatttGGGAGAAGGAGCAAAACTCCATGCGGCAACGGATACATTAGGACGCACCAGGTTCATAGCTATACCGGATTTGATTGGTGGTATTGGGCAATCAATAATCATCCAGTGGGGGTAGAATCACGCAGAAGCATCTgt            >  2:190771/6‑142 (MQ=255)                                                                                                                                        gagaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg  >  1:439833/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                         GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGG  >  NC_000913/1207664‑1207941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.