New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	42 (0.860)	7 (0.160)	6/250	5.2	13.4%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	53 (1.230)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA  >  NC_000913/1209462‑1209743                                                                                                                                             |                                                                                                                                              tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTGCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                             <  1:734688/143‑1 (MQ=255)   aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCtt                                                                                                                                           <  1:619289/143‑1 (MQ=255)    ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTATTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtc                                                                                                                                          <  1:50200/143‑1 (MQ=255)      cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAGACCAACAGGTAATGCAGAGCCTtctc                                                                                                                                        <  2:111251/143‑1 (MQ=255)       aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTcccc                                                                                                                                       >  1:629006/1‑143 (MQ=255)       aaTTTATTTGCCCGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTcc                                                                                                                                       <  2:679979/143‑1 (MQ=255)               tGTCGGATAAGCCTTTGCCAGTGCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGNTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTNATGCAGAGCCTTCTCCCAAACCaa                                                                                                                               <  1:89299/143‑1 (MQ=255)                  cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                            <  2:47582/143‑1 (MQ=255)                    gATAAGCCTTTGCCAGTTCCGGGTATCCTTCAGCAGAAAAAGCGTCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                          <  2:278748/143‑1 (MQ=255)                     aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                         <  1:502065/143‑1 (MQ=255)                     aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTa                                                                                                                         >  1:159076/1‑143 (MQ=255)                        agcggttGCCAGTGCGGGGTGTTGTTCGGGAGAGAAAGCGGCACCAGTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                      <  2:206818/138‑1 (MQ=255)                        aGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                      <  2:838599/143‑1 (MQ=255)                         gCCTTTGCCAGTTCCGGGTCTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                     >  2:317336/1‑143 (MQ=255)                         gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTCCTCCCAAGCCAACGTTCATGaa                                                                                                                     >  2:877139/1‑143 (MQ=255)                            tttGCCAGTTCCGGGTTTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCCCGGAACCGGGACACCGACAGGTAATGCAGAGCCTTCTCCCATACCAACGTTCATGAAAAt                                                                                                                  >  2:126041/1‑143 (MQ=255)                             ttGCCGGTTCCGGGTATTCGTCAGCGGAAAAGGCGGCAGCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg                                                                                                                 <  2:235689/143‑1 (MQ=255)                               gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCCCCCAAACCAACGTTTATGAAAATgaa                                                                                                               >  2:678131/1‑143 (MQ=255)                                        gggTATTCGTCAGCAGAAGAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa                                                                                                      <  2:135954/143‑1 (MQ=255)                                           tATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAGACAACGTTTATGAAAATGAGGAAGTAACAAGc                                                                                                   >  2:549985/1‑143 (MQ=255)                                              tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                <  2:92728/143‑1 (MQ=255)                                                  cagcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATGACAAGCAAATGGc                                                                                            >  1:676949/1‑143 (MQ=255)                                                    gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGGAATAACAAGCAAATGGcat                                                                                          >  1:887992/1‑143 (MQ=255)                                                     cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc                                                                                         >  1:189372/1‑143 (MQ=255)                                                      agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCGACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTGATGAAAATGAAGAAATAACAAGAAAATGGcatca                                                                                        >  2:701374/1‑143 (MQ=255)                                                        aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAAAGCCTTCTCCCAAACCACCGGTTCTGAAAATGGAGGAATAACAAGCACATGGcctcata                                                                                      >  2:9166/1‑142 (MQ=255)                                                            aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                                                  >  2:556189/1‑143 (MQ=255)                                                               ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                                               >  1:132914/1‑143 (MQ=255)                                                                    cATTGCATTTCAGCCAGCCTGATGGCGGAATGCCTGACAGCGACTGTACCGGGACACCAACAGGTAATGCCGAGCCTTCTCCCAAACCAACTCGCATGAGAATGACGAAATCACAAGCACATGGCATCATTCCCGCTTTTccc                                                                          >  2:587403/1‑143 (MQ=255)                                                                         cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCCTTCCTGCTTTTCCCAgggg                                                                     >  2:829724/1‑143 (MQ=255)                                                                          aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                    >  2:737117/1‑143 (MQ=255)                                                                                gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAATCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                              <  2:663899/143‑1 (MQ=255)                                                                                     ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCATAGCCTTCTCCCAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACAAGGGGGAATTCAGATGc                                                         >  2:165358/1‑143 (MQ=255)                                                                                     ccTGTGGGCGGAGTGGCTGAAGTCCACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                         <  2:164123/143‑1 (MQ=255)                                                                                        gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCTAAAACCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCATGCTATTACGAGGAGGATTTAACATGCTTa                                                      >  2:379980/1‑143 (MQ=255)                                                                                           ggCGGAGTGGCTGAAGGCCACGGAACCGGTACACCAACAGGTAGTGTGGTGCCGGCACCCACACTACCTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                   <  2:629006/143‑1 (MQ=255)                                                                                           ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                   >  2:162378/1‑143 (MQ=255)                                                                                             cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                 <  1:595475/143‑1 (MQ=255)                                                                                                   ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                           <  1:113951/143‑1 (MQ=255)                                                                                                        aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                      <  1:639791/143‑1 (MQ=255)                                                                                                        aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                      >  2:639791/1‑143 (MQ=255)                                                                                                          ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACACGGGGGACTGAGCATGCTTATTGGCTATGTACGCGTAt                                    >  1:688617/1‑143 (MQ=255)                                                                                                           gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc                                   >  1:604295/1‑143 (MQ=255)                                                                                                            ccccgtaaCCGGGACACCAACAGTGAATGCAGAGCCTTCTCCTAAACCACCGTTTATAAAAATGAAGAAATAACAAGCAAATGTCATCATTCCTTCTTTTACCAGGGGGATTTAACATGCTTATTGGATATGTACGCGTATca                                  <  2:60616/137‑1 (MQ=255)                                                                                                             cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                 <  1:19380/143‑1 (MQ=255)                                                                                                             cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTCTGTACGCGTATcaa                                 >  1:521558/1‑143 (MQ=255)                                                                                                                 gtttcatgACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                             <  1:877139/136‑1 (MQ=255)                                                                                                                  aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                                                                                <  2:432913/59‑1 (MQ=255)                                                                                                                  aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                                                                                >  1:432913/1‑59 (MQ=255)                                                                                                                  aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                            <  1:317336/143‑1 (MQ=255)                                                                                                                  aaCCGGGACACCAACAGGAAAGGCAGAGCCTTCCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCCCAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                            <  1:126041/143‑1 (MQ=255)                                                                                                                      gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                        <  1:556189/143‑1 (MQ=255)                                                                                                                           acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                   >  1:565030/1‑143 (MQ=255)                                                                                                                            acAATAGGTAATGCAGAGCCTTCTTCCAAACCATCGTTTATGAAAATGAAGAAATAATAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGACCAGAaca                  <  2:27214/142‑1 (MQ=255)                                                                                                                               aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg               >  1:694888/1‑143 (MQ=255)                                                                                                                                 aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt             <  1:258922/143‑1 (MQ=255)                                                                                                                                  ggTAATGCAGTGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc            <  1:87645/143‑1 (MQ=255)                                                                                                                                      aTGCAGAGCCTTCTCCCACACCGACGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa        <  1:328105/143‑1 (MQ=255)                                                                                                                                          agagCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCAACTTATAACAGGGAGATTCAACTAGCTTATTGGCTATGCACGCGTACCAAGACATGACCAGGACACAGCTCCACAACGt    >  2:800089/1‑143 (MQ=255)                                                                                                                                            agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTac  >  2:692669/1‑142 (MQ=255)                                                                                                                                             |                                                                                                                                              TCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA  >  NC_000913/1209462‑1209743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.