New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3083831 =	57 (1.170)	6 (0.130)	4/264	6.5	10.0%	intergenic (‑34/+104)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
	?	NC_000913	3083868 =	55 (1.200)					intergenic (‑71/+67)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACCCAGTCTGCATCGCTGTCATACGGCTGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGC  >  NC_000913/3083690‑3083973                                                                                                                                              |                                                                                                                                               cACCCAGTCTGCATCGCTGTCATACGGCTGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATaaaaaaa                                                                                                                                               <  1:286445/143‑1 (MQ=255)      aGTCTGCATCGCTGTCATACGGCTGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGCAGGAATAAAGAAACCCtt                                                                                                                                          >  2:701191/1‑143 (MQ=255)       gTCCGCATCGCTGTCATACGGCTGGAAGCTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTc                                                                                                                                         <  1:175177/143‑1 (MQ=255)           gCATCGCTGTCATACGGCTGGAAGTTCATCGGCAGGCGTACAAAACCACAGGCATTGGACACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGCTGGACTCCTATTACCCAGTGGATCTAAAAACACCCTTCcgcg                                                                                                                                     >  2:38456/1‑143 (MQ=255)                        aCGGCTGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCcga                                                                                                                        <  1:512084/143‑1 (MQ=255)                             tGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTACGCCCGACGAgg                                                                                                                   >  2:462477/1‑143 (MQ=255)                               gAAGTTCTTGGGCAGGCGTAGAAAACCAAAGGCACTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTGATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGaa                                                                                                                 <  2:122102/143‑1 (MQ=255)                               gAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTGCTATTACAAAGTCGATATAAAACAACCCTTCCGCGTCGTTCGGCCCGACGCGGaa                                                                                                                 >  1:537863/1‑143 (MQ=255)                                 aGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAgg                                                                                                               >  2:264062/1‑143 (MQ=255)                                   ttCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGt                                                                                                             >  2:293596/1‑143 (MQ=255)                                    tCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTCTTAAAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAgggat                                                                                                            >  2:666896/1‑141 (MQ=255)                                    tCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGtt                                                                                                            <  2:502332/143‑1 (MQ=255)                                    tCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGtt                                                                                                            <  1:869771/143‑1 (MQ=255)                                       tCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGa                                                                                                         >  2:552318/1‑143 (MQ=255)                                        cGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTTGGAGTAATCGAGCCCGACCGCGTCGTGCGCCCCGCCGAGGGAGGGTTGGAt                                                                                                        >  1:198495/1‑143 (MQ=255)                                        cGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAACAAACCCTTCCGCGTCGTTAGGCCCGACGAGGCCGGGTTGGAt                                                                                                        >  2:469936/1‑143 (MQ=255)                                         ggCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGGATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGACGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGCTTGGGtt                                                                                                       >  2:252389/1‑143 (MQ=255)                                            gggCGTAAAAAACCAAAGGCATTGGAAACAAGTGAGTTATCGTACTGATGCCATAAGGCGCAAATGGCTGGACTCCTATTACAAAGTCGATATAAATAAACCCTTCAGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGt                                                                                                    <  2:357915/142‑1 (MQ=255)                                             gccgaaaaaaaCCAAAGGCATTGGAAACCAGGGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTc                                                                                                   <  1:398384/138‑1 (MQ=255)                                              gagagaaaaaCAAGAGGCATTGGCAACCAGCGCGTTATCGTATTGACGACCTAAGGTGCCCATGGATGGCCTCCCATTACAAAGTCGATATAAAAAACCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                  <  2:803995/138‑1 (MQ=255)                                              gCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                  <  2:138861/143‑1 (MQ=255)                                              gCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAGAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                  >  1:503940/1‑143 (MQ=255)                                                   aaaaaCCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATa                                                                                             >  2:570982/1‑143 (MQ=255)                                                      aaCCAGAGGCATTGGAAGCCAGTGAGTTATAAAATTAATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAAt                                                                                          <  2:388714/143‑1 (MQ=255)                                                         cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTCAGGTGCTCATGGAAGGACTCCTATTACAAACTCGACATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGACGGGTTGGATTTGTCACGATAACTtgt                                                                                       >  2:774634/1‑143 (MQ=255)                                                         cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATACATtgt                                                                                       >  2:843834/1‑143 (MQ=255)                                                         cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCGAAGGTGCTCATGGATGGACTCCTATTACAAGGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgt                                                                                       >  1:544465/1‑143 (MQ=255)                                                          aaaGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgtg                                                                                      <  2:586416/143‑1 (MQ=255)                                                            aGGCATTGGAAACCAGTGAGTTATCGTAGTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGc                                                                                    <  1:359492/143‑1 (MQ=255)                                                                      aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCAc                                                                          >  1:653980/1‑143 (MQ=255)                                                                        caaGTGAGTTATGGTATTGATGACCTAAGGGGCTCATGGCTGGACTCCTATTACCACGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCg                                                                        <  2:357408/141‑1 (MQ=255)                                                                           gTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTGGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTa                                                                     >  1:452210/1‑143 (MQ=255)                                                                                   tCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGc                                                             >  2:786723/1‑143 (MQ=255)                                                                                     gTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCAAAGCAAAATAAAGCgg                                                           >  1:266669/1‑143 (MQ=255)                                                                                      tATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGACGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATGACCGCTAAATTAAGCCGa                                                          >  1:232318/1‑143 (MQ=255)                                                                                      tATTGATGACCTAAGGTGCTCAGGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGa                                                          <  2:805190/143‑1 (MQ=255)                                                                                      caTTTATCACCCAAGGTGCTCATGGATGCACTCCTATTCCAAAGTCGATATAAAAACACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGa                                                          <  1:339864/142‑1 (MQ=255)                                                                                         tgatgaCCTAAGGTGCTCATGGATGGTTCCCTATTACAAAGTCGATATAAAAACATCTTTTTTCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTc                                                       <  2:770190/143‑1 (MQ=255)                                                                                           gtgaCCTAAGGTGCTCAAGGATAGACTCCTATTACAAAGTCGAGATAAACAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCaa                                                     <  2:409830/142‑1 (MQ=255)                                                                                           atgaCCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCaa                                                     >  1:476165/1‑143 (MQ=255)                                                                                            tgtgcTAAGGGGCGCAGGGATGGACTCCTATTACAAAGGCGATAGAAAAAAACCCTTCCGCGTCGTTAGGCCCGTCGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAg                                                    <  2:410205/139‑1 (MQ=255)                                                                                                    ggTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAg                                            >  1:97388/1‑143 (MQ=255)                                                                                                         tCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTACCACAGGACtt                                       >  2:638218/1‑143 (MQ=255)                                                                                                         tCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACtt                                       >  2:113978/1‑143 (MQ=255)                                                                                                           atcggtggaCGCCTATTACAAAGTCGATATAATAATACGCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTAc                                     <  2:577582/138‑1 (MQ=255)                                                                                                                tggtCTCGTATTACAACGTCGATATACAGAAACCCTTCCGCGTCGTGAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAACTTAAGCGGATTCATGTAACACAGGACTTACTCATc                                <  2:596314/143‑1 (MQ=255)                                                                                                                     tCCTATTCCAAAGTCGATATAAAAAAACACTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCaa                           <  1:462477/143‑1 (MQ=255)                                                                                                                        tactACAAAGGCGATAGAAAAAAGCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGAt                        <  2:50390/140‑1 (MQ=255)                                                                                                                         aTTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATa                       <  1:293596/143‑1 (MQ=255)                                                                                                                          ttACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATaa                      >  1:807609/1‑143 (MQ=255)                                                                                                                             cAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATGCTGGCGGATCATCCCCGCTAAATTAAGCGGCATCAAGTAACACACTACTTACCCAACATCAAgcacagta                   >  2:603014/1‑136 (MQ=255)                                                                                                                                  tCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATGAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAAca              >  2:513754/1‑142 (MQ=255)                                                                                                                                      tataAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATACATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCAACTTCAAGATAAGTATAACCGTAc          >  1:489458/1‑143 (MQ=255)                                                                                                                                      tataAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAATATCAATTTAAcagaac          >  2:805/1‑138 (MQ=255)                                                                                                                                        taAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaa        <  1:570982/143‑1 (MQ=255)                                                                                                                                         aaaaaaaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTTAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaaa       >  1:449708/1‑143 (MQ=255)                                                                                                                                         aaaaaaaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTGAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaaa       >  1:859758/1‑143 (MQ=255)                                                                                                                                              aaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCGCCGCGAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAAGCGTACAAACCTGc  >  2:326388/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               CACCCAGTCTGCATCGCTGTCATACGGCTGGAAGTTCATCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGC  >  NC_000913/3083690‑3083973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.