New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3083831 =	57 (1.170)	6 (0.130)	4/264	6.5	10.0%	intergenic (‑34/+104)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
	?	NC_000913	3083868 =	55 (1.200)					intergenic (‑71/+67)	speB/speA	agmatinase/biosynthetic arginine decarboxylase, PLP‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG  >  NC_000913/3083728‑3084008                                                                                                                                             |                                                                                                                                             tCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGa                                                                                                                                            >  2:552318/1‑143 (MQ=255)  cGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTTGGAGTAATCGAGCCCGACCGCGTCGTGCGCCCCGCCGAGGGAGGGTTGGAt                                                                                                                                           >  1:198495/1‑143 (MQ=255)  cGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAACAAACCCTTCCGCGTCGTTAGGCCCGACGAGGCCGGGTTGGAt                                                                                                                                           >  2:469936/1‑143 (MQ=255)   ggCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGGATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGACGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGCTTGGGtt                                                                                                                                          >  2:252389/1‑143 (MQ=255)      gggCGTAAAAAACCAAAGGCATTGGAAACAAGTGAGTTATCGTACTGATGCCATAAGGCGCAAATGGCTGGACTCCTATTACAAAGTCGATATAAATAAACCCTTCAGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGt                                                                                                                                       <  2:357915/142‑1 (MQ=255)       gccgaaaaaaaCCAAAGGCATTGGAAACCAGGGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTc                                                                                                                                      <  1:398384/138‑1 (MQ=255)        gagagaaaaaCAAGAGGCATTGGCAACCAGCGCGTTATCGTATTGACGACCTAAGGTGCCCATGGATGGCCTCCCATTACAAAGTCGATATAAAAAACCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                                                     <  2:803995/138‑1 (MQ=255)        gCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                                                     <  2:138861/143‑1 (MQ=255)        gCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAGAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTca                                                                                                                                     >  1:503940/1‑143 (MQ=255)             aaaaaCCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATa                                                                                                                                >  2:570982/1‑143 (MQ=255)                aaCCAGAGGCATTGGAAGCCAGTGAGTTATAAAATTAATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAAt                                                                                                                             <  2:388714/143‑1 (MQ=255)                   cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTCAGGTGCTCATGGAAGGACTCCTATTACAAACTCGACATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGACGGGTTGGATTTGTCACGATAACTtgt                                                                                                                          >  2:774634/1‑143 (MQ=255)                   cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATACATtgt                                                                                                                          >  2:843834/1‑143 (MQ=255)                   cAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCGAAGGTGCTCATGGATGGACTCCTATTACAAGGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgt                                                                                                                          >  1:544465/1‑143 (MQ=255)                    aaaGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgtg                                                                                                                         <  2:586416/143‑1 (MQ=255)                      aGGCATTGGAAACCAGTGAGTTATCGTAGTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGc                                                                                                                       <  1:359492/143‑1 (MQ=255)                                aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCAc                                                                                                             >  1:653980/1‑143 (MQ=255)                                  caaGTGAGTTATGGTATTGATGACCTAAGGGGCTCATGGCTGGACTCCTATTACCACGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCg                                                                                                           <  2:357408/141‑1 (MQ=255)                                     gTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTGGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTa                                                                                                        >  1:452210/1‑143 (MQ=255)                                             tCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGc                                                                                                >  2:786723/1‑143 (MQ=255)                                               gTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCAAAGCAAAATAAAGCgg                                                                                              >  1:266669/1‑143 (MQ=255)                                                tATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGACGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATGACCGCTAAATTAAGCCGa                                                                                             >  1:232318/1‑143 (MQ=255)                                                tATTGATGACCTAAGGTGCTCAGGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGa                                                                                             <  2:805190/143‑1 (MQ=255)                                                caTTTATCACCCAAGGTGCTCATGGATGCACTCCTATTCCAAAGTCGATATAAAAACACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGa                                                                                             <  1:339864/142‑1 (MQ=255)                                                   tgatgaCCTAAGGTGCTCATGGATGGTTCCCTATTACAAAGTCGATATAAAAACATCTTTTTTCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTc                                                                                          <  2:770190/143‑1 (MQ=255)                                                     gtgaCCTAAGGTGCTCAAGGATAGACTCCTATTACAAAGTCGAGATAAACAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCaa                                                                                        <  2:409830/142‑1 (MQ=255)                                                     atgaCCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCaa                                                                                        >  1:476165/1‑143 (MQ=255)                                                      tgtgcTAAGGGGCGCAGGGATGGACTCCTATTACAAAGGCGATAGAAAAAAACCCTTCCGCGTCGTTAGGCCCGTCGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAg                                                                                       <  2:410205/139‑1 (MQ=255)                                                              ggTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAg                                                                               >  1:97388/1‑143 (MQ=255)                                                                   tCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTACCACAGGACtt                                                                          >  2:638218/1‑143 (MQ=255)                                                                   tCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACtt                                                                          >  2:113978/1‑143 (MQ=255)                                                                     atcggtggaCGCCTATTACAAAGTCGATATAATAATACGCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTAc                                                                        <  2:577582/138‑1 (MQ=255)                                                                          tggtCTCGTATTACAACGTCGATATACAGAAACCCTTCCGCGTCGTGAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAACTTAAGCGGATTCATGTAACACAGGACTTACTCATc                                                                   <  2:596314/143‑1 (MQ=255)                                                                               tCCTATTCCAAAGTCGATATAAAAAAACACTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCaa                                                              <  1:462477/143‑1 (MQ=255)                                                                                  tactACAAAGGCGATAGAAAAAAGCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGAt                                                           <  2:50390/140‑1 (MQ=255)                                                                                   aTTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATa                                                          <  1:293596/143‑1 (MQ=255)                                                                                    ttACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATaa                                                         >  1:807609/1‑143 (MQ=255)                                                                                       cAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATGCTGGCGGATCATCCCCGCTAAATTAAGCGGCATCAAGTAACACACTACTTACCCAACATCAAgcacagta                                                      >  2:603014/1‑136 (MQ=255)                                                                                            tCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATGAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAAca                                                 >  2:513754/1‑142 (MQ=255)                                                                                                tataAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATACATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCAACTTCAAGATAAGTATAACCGTAc                                             >  1:489458/1‑143 (MQ=255)                                                                                                tataAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAATATCAATTTAAcagaac                                             >  2:805/1‑138 (MQ=255)                                                                                                  taAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaa                                           <  1:570982/143‑1 (MQ=255)                                                                                                   aaaaaaaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTTAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaaa                                          >  1:449708/1‑143 (MQ=255)                                                                                                   aaaaaaaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTGAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACaaa                                          >  1:859758/1‑143 (MQ=255)                                                                                                        aaCCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCGCCGCGAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAAGCGTACAAACCTGc                                     >  2:326388/1‑143 (MQ=255)                                                                                                           ccTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTc                                  >  1:608108/1‑143 (MQ=255)                                                                                                              tctgcgTCGTTCGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAGCTTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGaa                               <  2:413199/140‑1 (MQ=255)                                                                                                              gccGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGaa                               <  1:255128/142‑1 (MQ=255)                                                                                                                   gtcgtTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCtt                          <  1:552318/143‑1 (MQ=255)                                                                                                                         aGGCCCGACGCGGAAGGGTTGGATTTGTCCCAATAAATTGTGGCGGCTCATCACCCCCCAATTCAGACGATTTCAGTATCCCAGGACTTACTCATCTTCAAGATAAGTATAACCGTCGCAACCTCCCTCGCACTCGTCacaga                    >  2:773618/1‑139 (MQ=255)                                                                                                                            cccGACGAGGAAGGGTTGGCTTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACt                 <  1:446420/143‑1 (MQ=255)                                                                                                                              cgacgaGGAAGGGTTGCATTTGTCACAATAAATTGTGGCGGACTATCACCGCCAAATTAAGCGGCTTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTCCAAACCTGCCTCACACCCTTCAAACAACtgt               >  2:375025/1‑143 (MQ=255)                                                                                                                                   aGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTACCACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGttgttg          <  2:11170/143‑1 (MQ=255)                                                                                                                                   aGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGttgttg          <  1:821687/143‑1 (MQ=255)                                                                                                                                   aGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGttgttg          >  2:98688/1‑143 (MQ=255)                                                                                                                                          gTTTGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCa   <  1:252389/143‑1 (MQ=255)                                                                                                                                           ttGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAAACGTAAGCGAAAGCTTCGGACTCCACAAGGAACTGTTGTTGCAGTTCAg  >  2:389543/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                             TCGGCAGGCGTAAAAAACCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG  >  NC_000913/3083728‑3084008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.