Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 45 [0] [0] 44 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)41 (0.900) 36/262 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815803‑3816082
                                                                                                                                          |                                                                                                                                             
ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcctcagtcgccgtaaaaatcagtttgccagcgccgccttctgcCCTcc                                                                                                                                           >  2:362298‑M2/139‑143 (MQ=255)
     tgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                      >  2:752505‑M2/134‑143 (MQ=255)
        taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgcgcctcatcttacttttctacagacaaaaaaaaggcggcgcatcagtcgccgtaaaaatcagttgggcagcgcagcgttcggcCgtgcactgcacg                                                                                                                                   >  1:306597‑M2/131‑142 (MQ=255)
         acgcgaaaattctataaactcgcgcttctatggtttagtgcctttgctcctcatcttccttttatacagagaagaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                  <  2:459257‑M2/14‑1 (MQ=255)
                aattcaataagctggcgctgatatggtttcaggccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                           <  2:623175‑M2/21‑1 (MQ=255)
                 attcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                          <  2:314861‑M2/22‑1 (MQ=255)
                     aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                                      <  1:437784‑M2/26‑1 (MQ=255)
                       taaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagccgcattaaaaatcagtttgccagcgccgccctctgcCCTCCCCCGCACCTCAACGCTGCgcccc                                                                                                                    >  2:714454‑M2/116‑142 (MQ=255)
                           ctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCtt                                                                                                                <  2:687139‑M2/32‑1 (MQ=255)
                             gccgctgatacggtttcattccttcgctcctcatcttacttttctacagaccaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgtcagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  2:31996‑M2/34‑1 (MQ=255)
                             cgcgctgatatggtttcatgccttcgctcctcatcttatgtttctacagacaaaaaaaacgcgactcataagtcgccttaaaaatccgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                              <  1:121871‑M2/34‑1 (MQ=255)
                                 ctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                          <  1:616004‑M2/38‑1 (MQ=255)
                                    atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                       >  1:43910‑M2/103‑143 (MQ=255)
                                      atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                                                                     >  1:733635‑M2/101‑143 (MQ=255)
                                        ggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttttggGGGCCCCAGCACTTCCATGATGCGCCCGTCTTCGGTCATCACTAc                                                                                                   >  1:643529‑M2/99‑143 (MQ=255)
                                            tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                               <  1:394244‑M2/49‑1 (MQ=255)
                                              atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                             <  1:700725‑M2/51‑1 (MQ=255)
                                                  cttcgctcctcatctgacttttctacagactaaaaaaaggcgcctcctcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                         <  2:127272‑M2/55‑1 (MQ=255)
                                                       ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCCTCAATGATGCGCCCGTCTTCGCTCCTCACTACGTTCATGTCggtccc                                                                                    >  2:18857‑M2/84‑141 (MQ=255)
                                                             ttcttgcttctctccaggcgtaacaaaggcgactcatcagtcgccttcaaaatcagtttgccagcgccgcctgctgcCGTCCTCTGCACTTCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                                                              <  2:227079‑M2/66‑1 (MQ=255)
                                                              tcttacttttctacagacaaaaaaaaggcgactcatcagccgccttacaaatcagtttgccagcgccgccctctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCCTCGGTCATCACCACCTTCATGTCCGTCCCtgcgccc                                                                             >  2:887744‑M2/77‑140 (MQ=255)
                                                                ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                           >  1:581502‑M2/75‑143 (MQ=255)
                                                                    ttttctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTTGGTCTCTTCGGCAGAGTCt                                                                       >  1:889380‑M2/71‑143 (MQ=255)
                                                                    ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccggcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCTCCGGCAGActct                                                                       >  2:793572‑M2/71‑143 (MQ=255)
                                                                         tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                  >  1:75973‑M2/66‑143 (MQ=255)
                                                                          acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATTACTACGTGCATGTCGGCCTCTGCGGCAGAGGCTTCAACg                                                                 >  2:616099‑M2/65‑143 (MQ=255)
                                                                          acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCGGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                                 >  2:12272‑M2/65‑143 (MQ=255)
                                                                               caaaagaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCGCGTCTTCGTTCACCACTTCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                            <  1:335874‑M2/84‑1 (MQ=255)
                                                                                aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTAAAAGTATTcc                                                           >  2:709579‑M2/59‑143 (MQ=255)
                                                                                       aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGc                                                    >  1:591752‑M2/52‑143 (MQ=255)
                                                                                       aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGACTTCAACGTATCCCATatcca                                                    >  1:232489‑M2/52‑141 (MQ=255)
                                                                                              tcatcagccgccttaagactcgttttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCTGATCGCAAACCGc                                             <  2:408970‑M2/99‑1 (MQ=255)
                                                                                                       gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                    <  1:563289‑M2/108‑1 (MQ=255)
                                                                                                          ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTCCACCCTATTCCACACCACCAGCCGCTgcgccgccccc                                 >  2:812250‑M2/33‑138 (MQ=255)
                                                                                                              aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTGTTCCAGATCGCAAACCGCTTCGCCGTTCACACtt                             >  2:65896‑M2/29‑143 (MQ=255)
                                                                                                                atcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTcc                           <  1:50370‑M2/117‑1 (MQ=255)
                                                                                                                atcagttggccagcgccgacatctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTcc                           <  1:581780‑M2/117‑1 (MQ=255)
                                                                                                                   ggtgcgccagctccgcgctctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATGCCAGATCGCAGACCGCTTCGCCGTTCACAATTCCGAc                        <  2:89948‑M2/120‑1 (MQ=255)
                                                                                                                         ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCATGTCGGAATCTGCGACAGAGACATCAACGTATTCTAGTTTGCAAACCACACCGCCGTTCACAATTACGACagaacc                  >  1:161785‑M2/18‑141 (MQ=255)
                                                                                                                               ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                   >  2:126802‑M2/12‑120 (MQ=255)
                                                                                                                               ccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                   <  1:126802‑M2/109‑1 (MQ=255)
                                                                                                                                        gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc   <  1:137114‑M2/141‑1 (MQ=255)
                                                                                                                                        gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGAAGAGTATTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc   >  2:133823‑M2/3‑143 (MQ=255)
                                                                                                                                         cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAGTTCCGACAGCAACTGCGGCTACCATCCCt  >  1:799539‑M2/2‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                             
AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815803‑3816082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.