Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 45 [0] [0] 44 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)41 (0.900) 36/262 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3816000
                                                                                                                                              |                                                                                                                                              
aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAACAACAGATTGACAGCGCCGCCTTCTGC                                                                                                                                                >  2:345715‑M1/1‑143 (MQ=255)
     cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCCTCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcctcc                                                                                                                                           >  2:362298‑M1/1‑138 (MQ=255)
          tgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                                                                      >  2:752505‑M1/1‑133 (MQ=255)
             tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCGCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGGCGCATCAGTCGCCGTAAAAATCAGTTGGGCAGCGCAGCGTTCGGCcgtgcactgcacg                                                                                                                                   >  1:306597‑M1/1‑130 (MQ=255)
              acgcgaaaATTCTATAAACTCGCGCTTCTATGGTTTAGTGCCTTTGCTCCTCATCTTCCTTTTATACAGAGAAGAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                  <  2:459257‑M1/141‑15 (MQ=255)
                     aaTTCAATAAGCTGGCGCTGATATGGTTTCAGGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  2:623175‑M1/143‑22 (MQ=255)
                      aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          <  2:314861‑M1/143‑23 (MQ=255)
                          aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                      <  1:437784‑M1/143‑27 (MQ=255)
                            tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGCCGCATTAAAAATCAGTTTGCCAGCGCCGCCCTCTGCcctcccccgcacctcaacgctgcgcccc                                                                                                                    >  2:714454‑M1/1‑115 (MQ=255)
                                cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                <  2:687139‑M1/143‑33 (MQ=255)
                                  gccgctgATACGGTTTCATTCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGTCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:31996‑M1/141‑35 (MQ=255)
                                  cgcgctGATATGGTTTCATGCCTTCGCTCCTCATCTTATGTTTCTACAGACAAAAAAAACGCGACTCATAAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  1:121871‑M1/142‑35 (MQ=255)
                                      cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                          <  1:616004‑M1/143‑39 (MQ=255)
                                         atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       >  1:43910‑M1/1‑102 (MQ=255)
                                           atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     >  1:733635‑M1/1‑100 (MQ=255)
                                             ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTTTGGgggccccagcacttccatgatgcgcccgtcttcggtcatcactac                                                                                                   >  1:643529‑M1/1‑98 (MQ=255)
                                                 tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:394244‑M1/143‑50 (MQ=255)
                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             <  1:700725‑M1/143‑52 (MQ=255)
                                                       cTTCGCTCCTCATCTGACTTTTCTACAGACTAAAAAAAGGCGCCTCCTCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         <  2:127272‑M1/143‑56 (MQ=255)
                                                            ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccctcaatgatgcgcccgtcttcgctcctcactacgttcatgtcggtccc                                                                                    >  2:18857‑M1/1‑83 (MQ=255)
                                                                  ttcTTGCTTCTCTCCAGGCGTAACAAAGGCGACTCATCAGTCGCCTTCAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcctctgcacttcaatgatgcgcccggcttcggtcatcactacgttcatgtcggtctctgcggc                                                                              <  2:227079‑M1/142‑67 (MQ=255)
                                                                   tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGCCGCCTTACAAATCAGTTTGCCAGCGCCGCCCTCTGCcgtcccctgcacttcaatgatgcgcccgccctcggtcatcaccaccttcatgtccgtccctgcgccc                                                                             >  2:887744‑M1/1‑76 (MQ=255)
                                                                     ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           >  1:581502‑M1/1‑74 (MQ=255)
                                                                         ttttCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgttggtctcttcggcagagtct                                                                       >  1:889380‑M1/1‑70 (MQ=255)
                                                                         ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCGGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctccggcagactct                                                                       >  2:793572‑M1/1‑70 (MQ=255)
                                                                              tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                  >  1:75973‑M1/1‑65 (MQ=255)
                                                                               aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcattactacgtgcatgtcggcctctgcggcagaggcttcaacg                                                                 >  2:616099‑M1/1‑64 (MQ=255)
                                                                               aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccggcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg                                                                 >  2:12272‑M1/1‑64 (MQ=255)
                                                                                    cAAAAGAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcgcgtcttcgttcaccacttcgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                            <  1:335874‑M1/143‑85 (MQ=255)
                                                                                     aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttaaaagtattcc                                                           >  2:709579‑M1/1‑58 (MQ=255)
                                                                                            aGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgc                                                    >  1:591752‑M1/1‑51 (MQ=255)
                                                                                            aGGCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagacttcaacgtatcccatatcca                                                    >  1:232489‑M1/1‑51 (MQ=255)
                                                                                                   tcatcaGCCGCCTTAAGACTCGTTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcctgatcgcaaaccgc                                             <  2:408970‑M1/143‑100 (MQ=255)
                                                                                                            gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtt                                    <  1:563289‑M1/143‑109 (MQ=255)
                                                                                                               ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagcgtctccaccctattccacaccaccagccgctgcgccgccccc                                 >  2:812250‑M1/1‑32 (MQ=255)
                                                                                                                   aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtgttccagatcgcaaaccgcttcgccgttcacactt                             >  2:65896‑M1/1‑28 (MQ=255)
                                                                                                                     aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                           <  1:50370‑M1/143‑118 (MQ=255)
                                                                                                                     aTCAGTTGGCCAGCGCCGACATCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc                           <  1:581780‑M1/143‑118 (MQ=255)
                                                                                                                        ggtgcgccagcTCCGCGCTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatgccagatcgcagaccgcttcgccgttcacaattccgac                        <  2:89948‑M1/138‑121 (MQ=255)
                                                                                                                              ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatgtcggaatctgcgacagagacatcaacgtattctagtttgcaaaccacaccgccgttcacaattacgacagaacc                  >  1:161785‑M1/1‑17 (MQ=255)
                                                                                                                                    ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                   >  2:126802‑M1/1‑11 (MQ=255)
                                                                                                                                    ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                   <  1:126802‑M1/120‑110 (MQ=255)
                                                                                                                                             gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc   <  1:137114‑M1/143‑142 (MQ=255)
                                                                                                                                             gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggaagagtattcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccc   >  2:133823‑M1/1‑2 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacagttccgacagcaactgcggctaccatccct  >  1:799539‑M1/1‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: