breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 18 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4062810195 (1.250)3 (0.020) 3/412 NT 1.5% coding (564/1266 nt) yihN MFS transporter family protein
?NC_000913 = 4062816 199 (1.330)coding (570/1266 nt) yihN MFS transporter family protein
* ? NC_000913 = 3982339145 (0.930)3 (0.020) 3/416 NT 2.0% intergenic (+67/‑36) yifK/argX putative APC family amino acid transporter/tRNA‑Arg
?NC_000913 = 3982353 160 (1.060)intergenic (+81/‑22) yifK/argX putative APC family amino acid transporter/tRNA‑Arg
* ? NC_000913 3736308 =213 (1.360)4 (0.030) 4/402 NT 2.1% noncoding (155/171 nt) REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 3736340 = 165 (1.130)intergenic (+183/+13) xylR/bax xylose divergent operon transcriptional activator/putative glucosaminidase
* ? NC_000913 3100618 =210 (1.350)3 (0.020) 3/418 NT 1.4% coding (111/1047 nt) ansB periplasmic L‑asparaginase 2
?NC_000913 3100639 = 206 (1.360)coding (90/1047 nt) ansB periplasmic L‑asparaginase 2
* ? NC_000913 2796365 =145 (0.930)4 (0.030) 4/410 NT 2.9% coding (422/450 nt) ygaU uncharacterized protein
?NC_000913 2796386 = 134 (0.900)coding (401/450 nt) ygaU uncharacterized protein
* ? NC_000913 = 2766337206 (1.320)3 (0.020) 3/416 NT 1.4% coding (420/1074 nt) rnlA CP4‑57 prophage; RNase LS
?NC_000913 = 2766341 209 (1.380)coding (424/1074 nt) rnlA CP4‑57 prophage; RNase LS
* ? NC_000913 2713819 =170 (1.090)3 (0.020) 3/408 NT 1.9% coding (924/1335 nt) srmB ATP‑dependent RNA helicase
?NC_000913 2713920 = 142 (0.960)coding (1025/1335 nt) srmB ATP‑dependent RNA helicase
* ? NC_000913 = 2604989153 (0.980)4 (0.030) 4/412 NT 2.6% coding (179/1440 nt) hyfD hydrogenase 4, membrane subunit
?NC_000913 = 2604993 149 (1.000)coding (183/1440 nt) hyfD hydrogenase 4, membrane subunit
* ? NC_000913 = 2240541149 (0.950)3 (0.020) 3/426 NT 2.0% intergenic (‑193/+87) mglB/galS methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor
?NC_000913 = 2240546 147 (0.950)intergenic (‑198/+82) mglB/galS methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor
* ? NC_000913 1722616 =153 (0.980)3 (0.020) 3/408 NT 2.0% coding (496/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump
?NC_000913 = 1722612 153 (1.030)coding (492/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump