mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4320071 | 117 (1.040) | 3 (0.030) | 3/420 | NT | 2.7% | coding (593/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | NC_000913 | = 4320203 | 100 (0.930) | coding (461/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||
| * | ? | NC_000913 | = 4162515 | 126 (1.120) | 3 (0.030) | 3/426 | NT | 2.3% | coding (756/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913 | = 4162526 | 134 (1.230) | coding (745/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913 | 3923705 = | 178 (1.590) | 6 (0.060) | 5/414 | NT | 3.6% | intergenic (‑25/+39) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| ? | NC_000913 | 3923733 = | 156 (1.470) | intergenic (‑53/+11) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 | |||||
| * | ? | NC_000913 | = 3808073 | 100 (0.890) | 3 (0.030) | 3/430 | NT | 3.0% | coding (26/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein |
| ? | NC_000913 | = 3808074 | 96 (0.870) | coding (25/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | NC_000913 | 3741901 = | 161 (1.430) | 4 (0.040) | 3/412 | NT | 2.9% | coding (632/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913 | 3742227 = | 119 (1.130) | coding (306/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||
| * | ? | NC_000913 | = 3552307 | 106 (0.940) | 5 (0.050) | 5/422 | NT | 4.6% | coding (167/2394 nt) | malP | maltodextrin phosphorylase |
| ? | NC_000913 | = 3552313 | 105 (0.970) | coding (161/2394 nt) | malP | maltodextrin phosphorylase | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 5 (0.040) | 3/434 | NT | 4.9% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040683 | 97 (0.860) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3216165 = | 144 (1.280) | 3 (0.030) | 3/418 | NT | 2.2% | coding (327/765 nt) | yqjH | putative siderophore interacting protein |
| ? | NC_000913 | 3216247 = | 126 (1.180) | coding (245/765 nt) | yqjH | putative siderophore interacting protein | |||||
| * | ? | NC_000913 | = 2568222 | 70 (0.620) | 3 (0.030) | 3/394 | NT | 4.4% | noncoding (84/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2568323 = | 67 (0.660) | intergenic (‑216/+1) | eutH/eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase | |||||
| * | ? | NC_000913 | 2453898 = | 101 (0.900) | 3 (0.030) | 3/428 | NT | 2.6% | pseudogene (1104/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| ? | NC_000913 | 2454234 = | 129 (1.180) | pseudogene (768/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein | |||||