New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 668251	57 (0.890)	5 (0.080)	5/266	8.4	8.5%	coding (465/468 nt)	rlmH	23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent
	?	NC_000913	= 668256	54 (0.900)					coding (460/468 nt)	rlmH	23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTACAGGCAGG  >  NC_000913/668109‑668388                                                                                                                                               |                                                                                                                                          cGATAAGCACGCCGGTCAGCAACAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAACGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTCCTCACAGCTCCCGTAtcac                                                                                                                                           >  2:92345/1‑143 (MQ=255)  gATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTAtcact                                                                                                                                          >  1:1033889/1‑143 (MQ=255)        cACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGt                                                                                                                                    <  1:507898/143‑1 (MQ=255)        cACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGt                                                                                                                                    >  1:476951/1‑143 (MQ=255)          cGCCGGTCAGCAGCAAAACCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGa                                                                                                                                  <  2:956593/143‑1 (MQ=255)                 cagcagCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGAt                                                                                                                           <  2:476951/143‑1 (MQ=255)                   gcagcaAAAGCCCCAGAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCGGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGAtgg                                                                                                                         <  2:7103/143‑1 (MQ=255)                     agcaAAATCCCCAAAATGGCGCCCCGCGCCCGGCGCACAAACAGCGCGGTCTCTCCCGTATAGTCGCGACAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGAtggtt                                                                                                                       <  2:529548/143‑1 (MQ=255)                       caAAATCCCCACAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGAtggttgg                                                                                                                     <  1:313229/143‑1 (MQ=255)                            tCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGgtggtg                                                                                                                >  1:473367/1‑143 (MQ=255)                             cgccAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGa                                                                                                               <  1:32997/141‑1 (MQ=255)                               ccAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGGTGGTGGTGATg                                                                                                             >  2:773879/1‑143 (MQ=255)                               ccAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGATTCATCCGCAGCGTATACTACTCAAAGCTCCCTTATCACTAACGGTGATAAGGATGGTTGGTGGAGATg                                                                                                             >  1:281050/1‑143 (MQ=255)                                   aaaGGCGAGCATCGGCCTGCGCACTAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTATCCTCCGCTTCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTcc                                                                                                         <  2:1062751/143‑1 (MQ=255)                                   aaaGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATAATTCACGGTGAGAAGGATGGTTGGTGGTGATGCTcc                                                                                                         >  1:209827/1‑143 (MQ=255)                                    aaGGCGTCCAGCGCCCGGCCGACAGACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCAGTTGAGTCATCCGCTGCGTTCCATCCTTAATGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCa                                                                                                        <  2:137495/143‑1 (MQ=255)                                         gACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGCGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTTGTGCTGCTCCCCGccc                                                                                                   >  1:33217/1‑143 (MQ=255)                                         gACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGCGGTGCTGCTCCACGccc                                                                                                   >  2:719126/1‑143 (MQ=255)                                             aGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTAGCGAAAAGAGTGCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGAGATAAGGATGGTTGGTGGGGATGCTCCACGCCCGGTa                                                                                               >  1:904206/1‑143 (MQ=255)                                                     gcgcACAAACAGCGCGGACTCTGCCGTAGAGGCGGGAAAAGAGATCTGTAGTTTCATCGACGGCGGTTTCTACTAAAAGCTCCCTTATCACTCACGGTGCTAAGGAGGGGTGGTGGTGACACTACAAGTCAGGTACAGActcc                                                                                       >  2:1151166/1‑142 (MQ=255)                                                       gcACAAACAGCGCGGACTCTGCGGGATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGActctct                                                                                     <  1:572378/143‑1 (MQ=255)                                                        cacaAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGGCTCATCCGCTGCGTTGTCTACTCAAAGCTCCCTTATCTCTCACGGTGATAAGTATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTg                                                                                    <  1:21742/143‑1 (MQ=255)                                                         acaAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTGCTGTAGTTTCATCCGCTGCGGTTTCTACTCAAAGCTCCCTTATCACACACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTGTCGGc                                                                                   >  2:648015/1‑143 (MQ=255)                                                          caAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAAGCTGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCg                                                                                  >  1:781797/1‑143 (MQ=255)                                                              cAGCGCGGACTCTGCCGTATAGTCGCGAAAAGTGTTCTGTAGTTTCATCCGATGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCa                                                                              >  2:604230/1‑143 (MQ=255)                                                              cAGCGCGGACCCTTCCGTATAGTCGCGAAAGGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCATAGCTCCCTTATCTCTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCa                                                                              <  2:478760/143‑1 (MQ=255)                                                               cgcgcGGACTCTGCCGTACAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCACAGCTCCCTTATCACTCACGGTGATAAGTATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAg                                                                             <  1:64983/142‑1 (MQ=255)                                                                 cgcgGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCa                                                                           >  2:309880/1‑143 (MQ=255)                                                                  gcgGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAAGTGGGTTAGTTTTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCAc                                                                          <  1:1036525/143‑1 (MQ=255)                                                                   cgGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCCcg                                                                         >  1:472226/1‑143 (MQ=255)                                                                   cgGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCAGCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCAcg                                                                         <  1:765658/143‑1 (MQ=255)                                                                    ggcctctGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCAcgc                                                                        <  1:345061/140‑1 (MQ=255)                                                                    ggACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCAcgc                                                                        <  1:184444/143‑1 (MQ=255)                                                                      aCTCTGCCGTATAGTCGCGAAAAGAATTCCGCAGCGTCGGCGGCTGCGGTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTATGCGACCAGCACGCGa                                                                      >  1:489504/1‑143 (MQ=255)                                                                        gctGCCGTATAGTCGCGAGAAGAGTTCTGTAGTTTCATCCGCTGCGTTGTCTACTCAACGCTCCCTTACCCCTCACGGTGATAAGGATGGTTGGTGGTGATGCGCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAAc                                                                    <  1:82324/142‑1 (MQ=255)                                                                           gCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAg                                                                 <  1:974219/143‑1 (MQ=255)                                                                               tataGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGa                                                             <  1:309880/143‑1 (MQ=255)                                                                                     cgcgAGAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTACCACTCACGGTGATAAGGATGGTTGGTGGTGATGCT‑CACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGa                                                      <  2:241408/143‑1 (MQ=255)                                                                                      gcgAAAGGGGTTCTGGGGGTTGAGCCGCTGCGTGTTCTGCTCAAAGCGCCCTTGGCACTCGCGGTCATACGGATCGTTGGTGGTGATGCTCCGCGGCCGGTACAGACTCGCTGCGACCAGCACGCGAACCAGCGGATGGGGGa                                                      <  1:1119166/143‑1 (MQ=255)                                                                                      gcgAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGa                                                      >  1:425162/1‑143 (MQ=255)                                                                                      gcgAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATACTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGCTGGGGGa                                                      >  1:340245/1‑143 (MQ=255)                                                                                      gcgAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGCGGTGATGCTCCACGCCCGGTCGCGACTCACACCCACCAGCACGCGCACCAGCGCACGGGGGa                                                      >  2:810065/1‑143 (MQ=255)                                                                                      gccaaaaGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATACGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGa                                                      <  1:1022321/140‑1 (MQ=255)                                                                                        gAAAACAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAgg                                                    <  1:384465/143‑1 (MQ=255)                                                                                                         ttCGTCCGCTGCGTGTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGa                                   <  2:834284/143‑1 (MQ=255)                                                                                                                gCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGGGGGTAAGCGCCGACAGCGACCAGctc                            >  1:732196/1‑143 (MQ=255)                                                                                                                  tGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTg                          <  1:983278/143‑1 (MQ=255)                                                                                                                   gCGGTTTCTACTCAACGCTCCCTTACCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGc                         <  2:209827/143‑1 (MQ=255)                                                                                                                    cGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATTCGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGACCCAGCGGATGGGGGAGGGTAAGCCCCCACAGGGCCCAGGTCTgat                        >  2:328767/1‑141 (MQ=255)                                                                                                                        ttCTACTCAAAGCTCCGTTGTCACCCACGGTGATAAGGAGGGTTGGGGGTGATGCTCCACGCCCGGTACAGACGCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAgc                    <  2:28776/143‑1 (MQ=255)                                                                                                                              tCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACCGCGACCAGCTCTGCTCAGCcgccgc              >  1:309033/1‑143 (MQ=255)                                                                                                                              tCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGACGGGGGAGGGTCCGCGCCGACAGCCACCCGCTCCGCCCAgccgcccg              >  2:905322/1‑141 (MQ=255)                                                                                                                              tCAAAGCTCCCTTATCACTCACGGGGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCcgccgc              <  2:453823/143‑1 (MQ=255)                                                                                                                                   tcTCCCTTATCACTCCCGGTGATAAGGATGGTTGGTGCTGATGCTCCACGCCCGGTACCGACTCTCTGCGACCAGCACGCGAACCAGCGGATCGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTAc         <  2:1033889/142‑1 (MQ=255)                                                                                                                                     tCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGTCCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTAcag       <  1:604230/143‑1 (MQ=255)                                                                                                                                         ttATCACTCACGGTGATTCCTATACTTATTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTAcaggcag   <  1:773879/143‑1 (MQ=255)                                                                                                                                         ctATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTAcaggcag   <  1:860378/142‑1 (MQ=255)                                                                                                                                          tATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACATCGACCAGCTCTGCTCAGCCGCCGCTTTCacggcagg  >  2:737976/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                          CGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACTCACGGTGATAAGGATGGTTGGTGGTGATGCTCCACGCCCGGTACAGACTCTCTGCGACCAGCACGCGAACCAGCGGATGGGGGAGGGTAAGCGCCGACAGCGACCAGCTCTGCTCAGCCGCCGCTTTACAGGCAGG  >  NC_000913/668109‑668388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.