Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 68 [0] [0] 69 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)67 (1.130) 60/264 0.0 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAT  >  NC_000913/3815718‑3815991
                                                                                                                                             |                                                                                                                                     
cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCCGTCGCCTTAAAAATCAGTTTGCCCTCGCCGCCGTCTGCcg                                                                                                                                     >  1:862928‑M1/1‑141 (MQ=255)
  ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                   >  1:410766‑M1/1‑139 (MQ=255)
    tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                 <  1:801222‑M1/143‑7 (MQ=255)
    tgcttgcgAAGCGCAAATTCAATAACCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAGAAAGGCGTCTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                 <  1:701385‑M1/143‑7 (MQ=255)
      cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                               >  1:802667‑M1/1‑135 (MQ=255)
         gctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                            <  1:691771‑M1/143‑12 (MQ=255)
           tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                          >  1:290588‑M1/1‑130 (MQ=255)
              tcgcaAGTCCAATAAACGTGCGCTGATATGGCTTCATGCCATCGCTACTGTTGTGACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                       <  2:1119434‑M1/142‑17 (MQ=255)
               cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                      >  2:912809‑M1/1‑126 (MQ=255)
               cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTAAAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCACCGCAGCCTTCTGCcgtcacatgccctccaa                                                                                                                      >  1:95497‑M1/1‑126 (MQ=255)
                 cacattcAATAAACAAGCGGTGAGATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatg                                                                                                                    <  1:474834‑M1/140‑20 (MQ=255)
                   aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAACGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                  <  2:258713‑M1/143‑22 (MQ=255)
                       cAATACACTGGCGCTGGTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                              <  2:1077159‑M1/143‑26 (MQ=255)
                       cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                              <  1:949477‑M1/143‑26 (MQ=255)
                                ggCGCTGATATGGTTTCCTGCCTTCCCTCCTCATCTTACTTTGCTACAAACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                     <  1:156900‑M1/143‑35 (MQ=255)
                                ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacctccatgatgcgcccgtcttcg                                                                                                     >  2:86163‑M1/1‑109 (MQ=255)
                                       atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                              <  2:936358‑M1/143‑42 (MQ=255)
                                         atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcacgtcttcggtcaccact                                                                                            >  2:712683‑M1/1‑100 (MQ=255)
                                           ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcaccactac                                                                                          >  1:179538‑M1/1‑98 (MQ=255)
                                            gtgtcatGCCTTCTCCCCTCATCTTAGTTTCCTACAGACAAAAACAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                         <  1:861603‑M1/140‑47 (MQ=255)
                                             tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacg                                                                                         >  1:751628‑M1/1‑97 (MQ=255)
                                              ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgcacttcaatgatgcgcccgtcttcggtcatcactaagtt                                                                                       >  1:302512‑M1/1‑95 (MQ=255)
                                              ttCATGCCCTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTGTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                       <  1:1108491‑M1/143‑49 (MQ=255)
                                               tCATGCCTTCGCTCCTCATCTCACTTTTCTACAGAAAAAAAAAAGGAGTCTCTTGCACCGCCTGAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                      <  1:530890‑M1/143‑50 (MQ=255)
                                                cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgca                                                                                     >  1:63934‑M1/1‑93 (MQ=255)
                                                  tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgacgcgcccgtctgcggtcatcactccgtccatc                                                                                   >  1:473645‑M1/1‑91 (MQ=255)
                                                    ccTTCGCTCCTCATCTTCCTTTTCTACAGCCAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgtgcccgtcttcggtcatcactacgttcatgtcg                                                                                <  2:605122‑M1/143‑56 (MQ=255)
                                                       tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                              <  1:559637‑M1/143‑58 (MQ=255)
                                                         gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                            >  1:925990‑M1/1‑84 (MQ=255)
                                                            gctcttCGTATTTTCCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg                                                                         <  2:330434‑M1/142‑63 (MQ=255)
                                                             ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCTTTCTACcgtcccctgcacttcaatgatgctcccgtcttcggtcatcactacgttaatttcggtctctgc                                                                        >  1:442911‑M1/1‑80 (MQ=255)
                                                                aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgccttcggtcatcactaccttcctgtcggtctctgcgtc                                                                     >  1:759488‑M1/1‑77 (MQ=255)
                                                                     aCTTATCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacctcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagt                                                                <  1:258956‑M1/143‑72 (MQ=255)
                                                                        tttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcacttcaatgatgcgcccggcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                             <  2:118182‑M1/143‑75 (MQ=255)
                                                                           cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcatcactacgttcatgtcggtctctccggcagagtcttaca                                                          >  2:1092727‑M1/1‑66 (MQ=255)
                                                                           cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                          <  1:1038588‑M1/143‑78 (MQ=255)
                                                                            tccagGCAAAAAATAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                         <  2:478835‑M1/141‑79 (MQ=255)
                                                                             aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggcttaaacg                                                        >  1:444582‑M1/1‑64 (MQ=255)
                                                                                gACAAAAAAAAGGCGACTCATCAGGCGCCTCAAAAATCAGTTTGCCAGCGCCCCCTTCCTCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcaatacgttcatggcgggctctgcggcagagtcttcaacgtat                                                     <  2:565812‑M1/143‑83 (MQ=255)
                                                                                  cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc                                                   <  1:912809‑M1/143‑85 (MQ=255)
                                                                                    aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctgcgacgtattcc                                                  >  2:1089151‑M1/1‑58 (MQ=255)
                                                                                     aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttccacgtattcca                                                 >  1:1011243‑M1/1‑57 (MQ=255)
                                                                                       aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaggggcttcaacgtagtccaga                                               >  1:808410‑M1/1‑55 (MQ=255)
                                                                                            ggCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgca                                          >  1:943491‑M1/1‑50 (MQ=255)
                                                                                             gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa                                         >  1:91358‑M1/1‑49 (MQ=255)
                                                                                              cgccccatccgtcgcCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                        <  1:104479‑M1/138‑96 (MQ=255)
                                                                                              cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                        <  1:326087‑M1/143‑96 (MQ=255)
                                                                                              cGACCCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                        <  2:444742‑M1/143‑96 (MQ=255)
                                                                                               gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtgttccagatcgcaacc                                       >  2:454765‑M1/1‑47 (MQ=255)
                                                                                                   catcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgct                                   >  2:53394‑M1/1‑43 (MQ=255)
                                                                                                    atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctcttcggcagcgtcttcaacgtattccagatcgcaaaccgctt                                  >  1:1104893‑M1/1‑42 (MQ=255)
                                                                                                        gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                              <  1:118140‑M1/143‑106 (MQ=255)
                                                                                                        gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                              >  2:1027192‑M1/1‑38 (MQ=255)
                                                                                                              ttacacatcagttTGCCCGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                        <  2:728032‑M1/137‑112 (MQ=255)
                                                                                                              ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgtccatgccggtctctgcggcagagtcctcgacgcatgacggctcgcaagccgcgtcgccgtccac                        >  2:169026‑M1/1‑32 (MQ=255)
                                                                                                               tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttccagatcgcaaaccgcttcgccgttccca                       >  2:1072385‑M1/1‑31 (MQ=255)
                                                                                                                aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa                      >  1:723256‑M1/1‑30 (MQ=255)
                                                                                                                   aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttgggtcatcactacgttcatttcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                   <  1:824853‑M1/143‑117 (MQ=255)
                                                                                                                   aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                   >  1:671758‑M1/1‑27 (MQ=255)
                                                                                                                     tCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttccccgttcccaatcccg                 >  2:692808‑M1/1‑25 (MQ=255)
                                                                                                                      cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatatcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                <  2:576324‑M1/143‑120 (MQ=255)
                                                                                                                      cAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                <  1:338060‑M1/143‑120 (MQ=255)
                                                                                                                         tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcaagatcgcaaaccgcttcgccgttcgcaattcccacag             >  2:83340‑M1/1‑21 (MQ=255)
                                                                                                                           tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcccccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaa           <  1:836788‑M1/143‑125 (MQ=255)
                                                                                                                             ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcccgctcctaaaccgcttcgccgttcacaattcccacagaacc         >  2:810466‑M1/1‑17 (MQ=255)
                                                                                                                             ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggccatcactacgttcatgtcggtctctgccgcagagtcttcaacgcattccagatcgcacaccgctccgccgttcaccactccgacagaccc         >  2:376024‑M1/1‑17 (MQ=255)
                                                                                                                                  gccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacccttccgacagcacctgcgg    >  1:475025‑M1/1‑12 (MQ=255)
                                                                                                                                    cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacagttccgacagaaactgcggcc  >  1:407343‑M1/1‑10 (MQ=255)
                                                                                                                                             |                                                                                                                                     
CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAT  >  NC_000913/3815718‑3815991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: