New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2666016 =	41 (0.960)	3 (0.070)	3/276	6.4	6.8%	coding (582/1281 nt)	csiE	stationary phase inducible protein
	?	NC_000913	2666038 =	43 (1.030)					coding (604/1281 nt)	csiE	stationary phase inducible protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCT  >  NC_000913/2665879‑2666156                                                                                                                                          |                                                                                                                                             atTCATTGCCTGTGTTTGTAACTGCAACATTGTGTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCa                                                                                                                                         <  2:419160/143‑1 (MQ=255)   tCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCCACGTCGCTGGGCGGCATCCTGCCTTGAATTTCAGATAGTGCAGGAAATTTGACACCACtcgaaac                                                                                                                                       >  2:387502/1‑137 (MQ=255)         ccTGTGTCTGTGTCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCGCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCggg                                                                                                                                 <  2:632928/143‑1 (MQ=255)                      cggCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGACATTGGACGTCACTGGCAGCGTCGGGCGCTCCAGCCTGt                                                                                                                    <  2:239936/141‑1 (MQ=255)                       tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAACTTGGACGCCACTGGCCGCGTCGGGCGCTCCAGCCTGTa                                                                                                                   >  2:261440/1‑143 (MQ=255)                       tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTGCAGCCTGTa                                                                                                                   >  2:354549/1‑143 (MQ=255)                        gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTac                                                                                                                  >  2:72400/1‑143 (MQ=255)                        gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTac                                                                                                                  >  1:20768/1‑143 (MQ=255)                         cAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCCGTccc                                                                                                                 >  2:704249/1‑143 (MQ=255)                                  ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCtgatga                                                                                                        <  2:351050/143‑1 (MQ=255)                                  ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCtcacgc                                                                                                        >  2:542396/1‑138 (MQ=255)                                     ctgcAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGcc                                                                                                     >  1:538338/1‑143 (MQ=255)                                        cagcaCCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCAcg                                                                                                  >  2:179626/1‑142 (MQ=255)                                               acGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGGCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATg                                                                                           <  2:619081/143‑1 (MQ=255)                                                cGCTGCAATTACGCCTCAGTTTAAGCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATgg                                                                                          <  2:315418/143‑1 (MQ=255)                                                 gCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGc                                                                                         >  1:468724/1‑143 (MQ=255)                                                        gtACGCCTCACTTCAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtt                                                                                  <  2:232792/142‑1 (MQ=255)                                                         tACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGCTGATGGCaccactgt                                                                                 >  2:493425/1‑141 (MQ=255)                                                            gCCTCAGTTTAATCTGGTCCAACGTCGCGGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtttttt                                                                              <  1:10405/143‑1 (MQ=255)                                                                     tAATCCGCTCCAGGGGCGCTGGGCGGAATCCTGGCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGc                                                                     <  1:290027/143‑1 (MQ=255)                                                                      actCCGCTCGACCGTCGCTCGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                    <  1:310730/141‑1 (MQ=255)                                                                      aaTCCGCTCCAACGTCGCTGGGCGGAAGCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                    <  2:611418/143‑1 (MQ=255)                                                                            cTCCACCGTCCCTGGGCGGAATCCTGCCTCGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                              <  1:339172/143‑1 (MQ=255)                                                                            cTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                              <  1:339828/143‑1 (MQ=255)                                                                             tCCAACGTCGCTGGGCGGAATCCTGCCTTGAGTTTCAGCCAGCGCAGGGAATCGGACGCCACTGGCAGCGAACGGAGGTCCTGCCTGTACCACC‑GATGAGCCACTGTTCAGGGCCCTACCTTGTTCCATGCTCCggcctccag                                                            >  2:678371/1‑136 (MQ=255)                                                                              ccAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCACGTTGCGGGTTCCCg                                                            >  1:88173/1‑143 (MQ=255)                                                                               cAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCCCTGTTCATCGCACTCCTTTTCTCCATCTGGCGCCTTccata                                                           >  1:497545/1‑140 (MQ=255)                                                                                        tGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCg                                                  <  1:120213/143‑1 (MQ=255)                                                                                              gAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAAGTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATgc                                            <  1:768755/143‑1 (MQ=255)                                                                                                aTCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGCGATgcgc                                          >  1:314016/1‑143 (MQ=255)                                                                                                 tCCCGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCa                                         <  1:709298/143‑1 (MQ=255)                                                                                                    tGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGTCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCa                                      >  2:409754/1‑143 (MQ=255)                                                                                                       cTTGCATTTCATGTAGCGCACGAAATTGGCCGCCACTGGCACCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCg                                   <  1:26503/143‑1 (MQ=255)                                                                                                        ttGAATTTCAGGTAGCGCAGGAACTTGGACGCGACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGAGGAGCCCCTGTTTATGGCACTACTTTTTTCGATGTTGCGGGTTCCCGATCCAGTGCGGGCGGCGCacgcgcag                                  >  2:410191/1‑136 (MQ=255)                                                                                                        ttGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg                                  >  1:681566/1‑143 (MQ=255)                                                                                                             ctgcaggcaggGCAGGAAATGGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacag                             <  1:69206/140‑1 (MQ=255)                                                                                                                   gtggcgcACGAGAGTGGACGCCACTGGCGGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAtt                       <  2:771056/140‑1 (MQ=255)                                                                                                                           ggAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGCTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATCGCGGGATGCGCATCAGCGGGACAGACAATAGCCTccgg               >  1:672103/1‑140 (MQ=255)                                                                                                                            gAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATTTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCCGCGGGACAGACAATTGCGTCAGTc              >  1:547823/1‑143 (MQ=255)                                                                                                                                   gagcccgcTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCaaa       <  2:324026/136‑1 (MQ=255)                                                                                                                                    aCGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAGTGCGTCAGTCTATCAAAc      >  1:474598/1‑143 (MQ=255)                                                                                                                                        cACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCt  >  1:273601/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                             ATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCT  >  NC_000913/2665879‑2666156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.