New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2666016 =	41 (0.960)	3 (0.070)	3/276	6.4	6.8%	coding (582/1281 nt)	csiE	stationary phase inducible protein
	?	NC_000913	2666038 =	43 (1.030)					coding (604/1281 nt)	csiE	stationary phase inducible protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCT  >  NC_000913/2665900‑2666177                                                                                                                                           |                                                                                                                                            cggCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGACATTGGACGTCACTGGCAGCGTCGGGCGCTCCAGCCTGt                                                                                                                                         <  2:239936/141‑1 (MQ=255)  tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAACTTGGACGCCACTGGCCGCGTCGGGCGCTCCAGCCTGTa                                                                                                                                        >  2:261440/1‑143 (MQ=255)  tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTGCAGCCTGTa                                                                                                                                        >  2:354549/1‑143 (MQ=255)   gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTac                                                                                                                                       >  2:72400/1‑143 (MQ=255)   gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTac                                                                                                                                       >  1:20768/1‑143 (MQ=255)    cAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCCGTccc                                                                                                                                      >  2:704249/1‑143 (MQ=255)             ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCtgatga                                                                                                                             <  2:351050/143‑1 (MQ=255)             ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCtcacgc                                                                                                                             >  2:542396/1‑138 (MQ=255)                ctgcAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGcc                                                                                                                          >  1:538338/1‑143 (MQ=255)                   cagcaCCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCAcg                                                                                                                       >  2:179626/1‑142 (MQ=255)                          acGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGGCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATg                                                                                                                <  2:619081/143‑1 (MQ=255)                           cGCTGCAATTACGCCTCAGTTTAAGCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATgg                                                                                                               <  2:315418/143‑1 (MQ=255)                            gCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGc                                                                                                              >  1:468724/1‑143 (MQ=255)                                   gtACGCCTCACTTCAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtt                                                                                                       <  2:232792/142‑1 (MQ=255)                                    tACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGCTGATGGCaccactgt                                                                                                      >  2:493425/1‑141 (MQ=255)                                       gCCTCAGTTTAATCTGGTCCAACGTCGCGGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtttttt                                                                                                   <  1:10405/143‑1 (MQ=255)                                                tAATCCGCTCCAGGGGCGCTGGGCGGAATCCTGGCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGc                                                                                          <  1:290027/143‑1 (MQ=255)                                                 actCCGCTCGACCGTCGCTCGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                                         <  1:310730/141‑1 (MQ=255)                                                 aaTCCGCTCCAACGTCGCTGGGCGGAAGCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                                         <  2:611418/143‑1 (MQ=255)                                                       cTCCACCGTCCCTGGGCGGAATCCTGCCTCGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                                                   <  1:339172/143‑1 (MQ=255)                                                       cTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                                                   <  1:339828/143‑1 (MQ=255)                                                        tCCAACGTCGCTGGGCGGAATCCTGCCTTGAGTTTCAGCCAGCGCAGGGAATCGGACGCCACTGGCAGCGAACGGAGGTCCTGCCTGTACCACC‑GATGAGCCACTGTTCAGGGCCCTACCTTGTTCCATGCTCCggcctccag                                                                                 >  2:678371/1‑136 (MQ=255)                                                         ccAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCACGTTGCGGGTTCCCg                                                                                 >  1:88173/1‑143 (MQ=255)                                                          cAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCCCTGTTCATCGCACTCCTTTTCTCCATCTGGCGCCTTccata                                                                                >  1:497545/1‑140 (MQ=255)                                                                   tGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCg                                                                       <  1:120213/143‑1 (MQ=255)                                                                         gAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAAGTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATgc                                                                 <  1:768755/143‑1 (MQ=255)                                                                           aTCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGCGATgcgc                                                               >  1:314016/1‑143 (MQ=255)                                                                            tCCCGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCa                                                              <  1:709298/143‑1 (MQ=255)                                                                               tGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGTCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCa                                                           >  2:409754/1‑143 (MQ=255)                                                                                  cTTGCATTTCATGTAGCGCACGAAATTGGCCGCCACTGGCACCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCg                                                        <  1:26503/143‑1 (MQ=255)                                                                                   ttGAATTTCAGGTAGCGCAGGAACTTGGACGCGACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGAGGAGCCCCTGTTTATGGCACTACTTTTTTCGATGTTGCGGGTTCCCGATCCAGTGCGGGCGGCGCacgcgcag                                                       >  2:410191/1‑136 (MQ=255)                                                                                   ttGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg                                                       >  1:681566/1‑143 (MQ=255)                                                                                        ctgcaggcaggGCAGGAAATGGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacag                                                  <  1:69206/140‑1 (MQ=255)                                                                                              gtggcgcACGAGAGTGGACGCCACTGGCGGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAtt                                            <  2:771056/140‑1 (MQ=255)                                                                                                      ggAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGCTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATCGCGGGATGCGCATCAGCGGGACAGACAATAGCCTccgg                                    >  1:672103/1‑140 (MQ=255)                                                                                                       gAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATTTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCCGCGGGACAGACAATTGCGTCAGTc                                   >  1:547823/1‑143 (MQ=255)                                                                                                              gagcccgcTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCaaa                            <  2:324026/136‑1 (MQ=255)                                                                                                               aCGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAGTGCGTCAGTCTATCAAAc                           >  1:474598/1‑143 (MQ=255)                                                                                                                   cACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCt                       >  1:273601/1‑143 (MQ=255)                                                                                                                        gCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTATACATGTTGCGGGTTCCCGATACATTGCGGAATGAGCGTCAGCGGCGCAGCCAATAGCGTGAGTATATCGAACATCTgcaaa                  >  2:412424/1‑139 (MQ=255)                                                                                                                              tCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCAtt            >  2:631243/1‑143 (MQ=255)                                                                                                                               cGGGCGCTCCAGCCTGTCCCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCAttt           <  1:370559/143‑1 (MQ=255)                                                                                                                                   cgcTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGAATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGt       <  2:556228/143‑1 (MQ=255)                                                                                                                                      tCCAGCCTGTACCACCTGATGAGATGCTGTTGATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGGGGGGTGCGCATCAGCGGGACAGAAAGTTGCGTCAGGCTACCGAACTTCTGGGAAGCCGTTTGCGTGAg    >  2:278240/1‑143 (MQ=255)                                                                                                                                        cAGCCGGTACCTCCTGATGAGCCTCTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTCCGGGTTGCGCATCAGCGGGACAGACAATTGGGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCt  <  2:178021/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            CTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCT  >  NC_000913/2665900‑2666177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.