New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2349901 =43 (0.810)4 (0.080) 4/264 6.0 9.0% intergenic (+8/+34) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
?NC_000913 2349927 = 41 (0.830)intergenic (+34/+8) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGT  >  NC_000913/2349762‑2350042
                                                                                                                                           |                                                                                                                                             
tgtTCCGTTCCTCTCGAACCAACTTTCACACGACCAATACCGTGTCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAgg                                                                                                                                            >  1:909149/1‑143 (MQ=255)
  ttccgttccTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGAt                                                                                                                                          >  1:365961/1‑143 (MQ=255)
           tctcGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGa                                                                                                                                 >  1:226038/1‑143 (MQ=255)
             tagAACCAACTTTCTATCGACAGATTTCTTTGCTGGCTAAAGAAAAGCCGGAAGAAGGCAGACCACTGTTATTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAAc                                                                                                                               <  1:61441/141‑1 (MQ=255)
                aaCCAACTTTCTATCGACAGATTTCGTTGCTGGTTAAAAAAAAGCCGGTAGAAGGCAGTCCACTGTCTTTACTCCAAATGTGCATGGAACAAGTAGTGGTGATTGCAAAAAATGGATATGAGACAGGATGTCGAATTAACGcc                                                                                                                            >  2:429966/1‑143 (MQ=255)
                aaCCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGAGGGCGCATGAACGcc                                                                                                                            >  1:187676/1‑143 (MQ=255)
                        ttCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGCCAGGATGACGCACGAACGCCATCCTGCa                                                                                                                    >  2:709374/1‑143 (MQ=255)
                        tgcTATCAACAGATTTGGTTGCGGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCa                                                                                                                    <  2:5456/141‑1 (MQ=255)
                            ctCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGCGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTac                                                                                                                <  2:436146/142‑2 (MQ=255)
                                    aTTTCGTTGGTGGGTGAAGGAAGGGCGGTAGAGGGCGGTCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGTTGTCACATCAACGCCATCCTGCAGTAACATTActc                                                                                                        <  2:527528/143‑1 (MQ=255)
                                      ttCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCtt                                                                                                      <  1:220356/143‑1 (MQ=255)
                                          ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttatt                                                                                                  <  1:772221/143‑1 (MQ=255)
                                          ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAAGTAGTGGCGATTGGAACAATTTGATATGAGACAGGATGGCGCATGAGCGCCGTCCTGCAGTAACATTACTCTttatt                                                                                                  >  2:185185/1‑143 (MQ=255)
                                                     aaaaacGCCGTTAGCAGGTCGGCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                       <  2:949283/141‑1 (MQ=255)
                                                     aGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                       >  1:459053/1‑143 (MQ=255)
                                                                tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                            >  2:509287/1‑143 (MQ=255)
                                                                tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                            >  2:401240/1‑143 (MQ=255)
                                                                  gAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAgg                                                                          >  2:847932/1‑143 (MQ=255)
                                                                     ggCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                       <  2:953082/143‑1 (MQ=255)
                                                                        aGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCAGGAACGCCCTCCTGCAGTAACATAACTCTGTATTAAGAACTTTTACCGCACTATCAgacaaagc                                                                    >  2:1451/1‑136 (MQ=255)
                                                                         gTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCa                                                                   <  1:836493/143‑1 (MQ=255)
                                                                          tCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTCGCAGGGAAGTCAg                                                                  >  1:865281/1‑143 (MQ=255)
                                                                                gTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACa                                                            >  1:164640/1‑143 (MQ=255)
                                                                                   tttACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGcc                                                         <  1:15589/143‑1 (MQ=255)
                                                                                    tcactacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGccc                                                        <  1:151124/141‑1 (MQ=255)
                                                                                        tacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCAttt                                                    >  1:68470/1‑143 (MQ=255)
                                                                                                   agcgAACAATTAGGGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTAGTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                         <  1:185185/140‑1 (MQ=255)
                                                                                                   aTGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                         <  2:164640/143‑1 (MQ=255)
                                                                                                   aTGGAACAATTAGTGGCGACTGGAACAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTCCTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAGTCAGTAAACAGACCACTTACACCCCCttg                                         >  2:343119/1‑142 (MQ=255)
                                                                                                     ggAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGt                                       <  2:133312/143‑1 (MQ=255)
                                                                                                           aTTAGTGGCGATTGGGAAAATTTGATATGAGACAGGATTGCGTCTGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACa                                 <  2:880158/143‑1 (MQ=255)
                                                                                                               gTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGc                             >  2:12332/1‑143 (MQ=255)
                                                                                                                  gCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatc                          >  2:910016/1‑143 (MQ=255)
                                                                                                                   cGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatca                         >  2:77566/1‑143 (MQ=255)
                                                                                                                    gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                     <  2:565507/82‑1 (MQ=255)
                                                                                                                    gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                     >  1:565507/1‑82 (MQ=255)
                                                                                                                         gAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAAc                   <  2:556406/143‑1 (MQ=255)
                                                                                                                            gaaTTTGATATGAGACAGGATGGAGGATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                <  2:530849/142‑1 (MQ=255)
                                                                                                                            aaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                <  1:935157/143‑1 (MQ=255)
                                                                                                                             aagctGACATGAGGCAGGAGGGCGCATGAAAGCCATCCTGAAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACATCCGCTTTGTTATACAGAGCATCATATAACTGAt               <  1:368024/139‑1 (MQ=255)
                                                                                                                              aTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGAtt              <  1:572261/143‑1 (MQ=255)
                                                                                                                                        agaCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATGTAACTGATTCACATCAGGa    >  1:688721/1‑143 (MQ=255)
                                                                                                                                          aCAGGATGCCGCATGAACGCCATCCTGCCGTCACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAACCAGCCCATGTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAgt  <  1:653075/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGT  >  NC_000913/2349762‑2350042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.