New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2349901 =43 (0.810)4 (0.080) 4/264 6.0 9.0% intergenic (+8/+34) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
?NC_000913 2349927 = 41 (0.830)intergenic (+34/+8) yfaH/glpQ pseudogene/periplasmic glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAC  >  NC_000913/2349786‑2350064
                                                                                                                                             |                                                                                                                                         
ttCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGCCAGGATGACGCACGAACGCCATCCTGCa                                                                                                                                          >  2:709374/1‑143 (MQ=255)
tgcTATCAACAGATTTGGTTGCGGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCa                                                                                                                                          <  2:5456/141‑1 (MQ=255)
    ctCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGCGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTac                                                                                                                                      <  2:436146/142‑2 (MQ=255)
            aTTTCGTTGGTGGGTGAAGGAAGGGCGGTAGAGGGCGGTCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGTTGTCACATCAACGCCATCCTGCAGTAACATTActc                                                                                                                              <  2:527528/143‑1 (MQ=255)
              ttCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCtt                                                                                                                            <  1:220356/143‑1 (MQ=255)
                  ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTttatt                                                                                                                        <  1:772221/143‑1 (MQ=255)
                  ttGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAAGTAGTGGCGATTGGAACAATTTGATATGAGACAGGATGGCGCATGAGCGCCGTCCTGCAGTAACATTACTCTttatt                                                                                                                        >  2:185185/1‑143 (MQ=255)
                             aaaaacGCCGTTAGCAGGTCGGCCGCTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                                             <  2:949283/141‑1 (MQ=255)
                             aGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTa                                                                                                             >  1:459053/1‑143 (MQ=255)
                                        tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                                                  >  2:401240/1‑143 (MQ=255)
                                        tAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCa                                                                                                  >  2:509287/1‑143 (MQ=255)
                                          gAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAgg                                                                                                >  2:847932/1‑143 (MQ=255)
                                             ggCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                                             <  2:953082/143‑1 (MQ=255)
                                                aGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCAGGAACGCCCTCCTGCAGTAACATAACTCTGTATTAAGAACTTTTACCGCACTATCAgacaaagc                                                                                          >  2:1451/1‑136 (MQ=255)
                                                 gTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCa                                                                                         <  1:836493/143‑1 (MQ=255)
                                                  tCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTCGCAGGGAAGTCAg                                                                                        >  1:865281/1‑143 (MQ=255)
                                                        gTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACa                                                                                  >  1:164640/1‑143 (MQ=255)
                                                           tttACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGcc                                                                               <  1:15589/143‑1 (MQ=255)
                                                            tcactacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGccc                                                                              <  1:151124/141‑1 (MQ=255)
                                                                tacAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCAttt                                                                          >  1:68470/1‑143 (MQ=255)
                                                                           agcgAACAATTAGGGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTAGTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                                               <  1:185185/140‑1 (MQ=255)
                                                                           aTGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCttt                                                               <  2:164640/143‑1 (MQ=255)
                                                                           aTGGAACAATTAGTGGCGACTGGAACAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTCCTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAGTCAGTAAACAGACCACTTACACCCCCttg                                                               >  2:343119/1‑142 (MQ=255)
                                                                             ggAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGt                                                             <  2:133312/143‑1 (MQ=255)
                                                                                   aTTAGTGGCGATTGGGAAAATTTGATATGAGACAGGATTGCGTCTGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACa                                                       <  2:880158/143‑1 (MQ=255)
                                                                                       gTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGc                                                   >  2:12332/1‑143 (MQ=255)
                                                                                          gCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatc                                                >  2:910016/1‑143 (MQ=255)
                                                                                           cGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGcatca                                               >  2:77566/1‑143 (MQ=255)
                                                                                            gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                                           <  2:565507/82‑1 (MQ=255)
                                                                                            gATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACt                                                                                                           >  1:565507/1‑82 (MQ=255)
                                                                                                 gAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAAc                                         <  2:556406/143‑1 (MQ=255)
                                                                                                    gaaTTTGATATGAGACAGGATGGAGGATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                                      <  2:530849/142‑1 (MQ=255)
                                                                                                    aaaTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGa                                      <  1:935157/143‑1 (MQ=255)
                                                                                                     aagctGACATGAGGCAGGAGGGCGCATGAAAGCCATCCTGAAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACATCCGCTTTGTTATACAGAGCATCATATAACTGAt                                     <  1:368024/139‑1 (MQ=255)
                                                                                                      aTTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGAtt                                    <  1:572261/143‑1 (MQ=255)
                                                                                                                agaCAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATGTAACTGATTCACATCAGGa                          >  1:688721/1‑143 (MQ=255)
                                                                                                                  aCAGGATGCCGCATGAACGCCATCCTGCCGTCACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAACCAGCCCATGTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAgt                        <  1:653075/143‑1 (MQ=255)
                                                                                                                    aGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGCgtgt                      >  2:811248/1‑143 (MQ=255)
                                                                                                                     ggATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATAACGAGAGTa                     >  2:565581/1‑143 (MQ=255)
                                                                                                                         ggCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCa                 <  2:2472/143‑1 (MQ=255)
                                                                                                                               tGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGt           <  1:932453/143‑1 (MQ=255)
                                                                                                                                        tCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAc  <  1:887745/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                         
TTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGAC  >  NC_000913/2349786‑2350064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.