Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 49 [0] [0] 49 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)46 (0.940) 38/264 0.3 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTC  >  NC_000913/3815721‑3815998
                                                                                                                                         |                                                                                                                                            
cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCCTACTTTTCGACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcagcc                                                                                                                                         >  2:431617‑M1/1‑138 (MQ=255)
  gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCACCTCTTACACATCAACAGACAAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCCCCTTCTGCcgtcccc                                                                                                                                       >  1:632265‑M1/1‑136 (MQ=255)
        tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCGGCCTTCGGCcgtcccctgccct                                                                                                                                 >  1:594000‑M1/1‑130 (MQ=255)
        tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTAGCCTTAAAAATCAGTTTGCCAGAGCAGCCTTCTGCcgtcccatgcact                                                                                                                                 >  1:414129‑M1/1‑130 (MQ=255)
         aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                <  1:763498‑M1/143‑15 (MQ=255)
         aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                >  2:390152‑M1/1‑129 (MQ=255)
              cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatg                                                                                                                           <  1:74907‑M1/143‑20 (MQ=255)
               aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTACAAATCAGTTTGCCAGCGCCGCCTTCTGCcgctccacgcacatcaatga                                                                                                                          >  2:95443‑M1/1‑123 (MQ=255)
                aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCACCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcggcccctgcacttcaatgat                                                                                                                         <  2:118864‑M1/143‑22 (MQ=255)
                   tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCCTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcggcccctgcacttcagtgatgcg                                                                                                                      >  1:309175‑M1/1‑119 (MQ=255)
                   tCAATAAACTGACGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGACGTACAAATCAAGTTGCCAGAGCACCCTTCCGCcctcccctacccttcaatgatgca                                                                                                                      >  2:9213‑M1/1‑119 (MQ=255)
                       tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGATTGCCAGCGCCGCCTTCTGCcgtcccccgcacttcaacgacgcgcccc                                                                                                                  >  2:146053‑M1/1‑115 (MQ=255)
                         aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc                                                                                                                >  2:208902‑M1/1‑113 (MQ=255)
                            tGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttc                                                                                                             >  2:895059‑M1/1‑110 (MQ=255)
                             ggtcctcatatcgtttcaTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                            <  1:793022‑M1/136‑35 (MQ=255)
                             ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcacccgtcttcg                                                                                                            <  1:33669‑M1/143‑35 (MQ=255)
                               cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAACAAGGCGACTCATCAGTCGCCTTAAAAATCAGCTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt                                                                                                          <  2:122189‑M1/143‑37 (MQ=255)
                                      atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGACGACTCATCAGTCGCCTTAAAAATCAGTTTGCAAGCGCCGCCTTCTGCcctcccctgcacttcaatgatgctcccgtcttcggtcataact                                                                                                   >  2:108869‑M1/1‑100 (MQ=255)
                                        ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCATTATGTggtgctctgcacttcaatgatgcgcccgtcttcggtcctcactac                                                                                                 >  1:215140‑M1/1‑98 (MQ=255)
                                          gttcATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                                               <  2:145317‑M1/142‑48 (MQ=255)
                                            tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                             >  1:106794‑M1/1‑94 (MQ=255)
                                                          ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTAGCATTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctgtgc                                                                               >  1:264629‑M1/1‑80 (MQ=255)
                                                           tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg                                                                              <  1:876607‑M1/143‑65 (MQ=255)
                                                                ttgctttTCTTCAGACAAAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                         <  2:755420‑M1/140‑70 (MQ=255)
                                                                ttACTTTGCTACAGACAAAAAAAAGGCGACTGATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                         <  2:208722‑M1/143‑70 (MQ=255)
                                                                 tACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCagtccactgcactgcaatgctgcgcccgtcttcgatcaccactccgtccatgtcggtgtccgccgcccgg                                                                        >  2:172398‑M1/1‑73 (MQ=255)
                                                                    ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                     >  1:749025‑M1/1‑70 (MQ=255)
                                                                     ttttgacagacAAAAAAAAGGCGCCTCACCAGTCGCCTTAAAAGCCAGCTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                    <  2:761044‑M1/138‑75 (MQ=255)
                                                                         tACAGACAAAAAAAAGGCGACTCATCGGTCGCCTTAAAAACCAGTGTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                <  1:87818‑M1/143‑79 (MQ=255)
                                                                            aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcgtcactccgttcatgtcggtctctgcggcagcgtcttcaacgta                                                             >  1:83557‑M1/1‑62 (MQ=255)
                                                                              aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacgtcaatgatgcgcccgtcttcgctcatcactccgttcatgtcggtctctccggcagcgccttcaacgtctt                                                           >  2:804120‑M1/1‑60 (MQ=255)
                                                                                aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgccagagccttcaacgtattcc                                                         >  1:796417‑M1/1‑58 (MQ=255)
                                                                                 aaaaaaaGGCGACTCATCGGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                        <  2:392549‑M1/143‑87 (MQ=255)
                                                                                  aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccac                                                       >  2:541096‑M1/1‑56 (MQ=255)
                                                                                  aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgctcacgtcgctctctgcggcagagtcttcaacgtcttccac                                                       >  2:173423‑M1/1‑56 (MQ=255)
                                                                                     aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                    <  1:501775‑M1/143‑91 (MQ=255)
                                                                                             cTCATCAGTCGCCTTAAAAATCAGTTTGCCGGCGCCGCCTTCTGCcgtcccctgcgcttcaatgatgcgcccgtctgcgggcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgccaaccg                                            >  1:524078‑M1/1‑45 (MQ=255)
                                                                                                    gTCGCCTTAAAAATGGGTTTGCCAGCGCCGCCTTCTGCcggcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                                     <  2:220206‑M1/143‑106 (MQ=255)
                                                                                                     tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagagtcttcaacgtattccagctcgtaagacgcttgcccg                                    >  1:845086‑M1/1‑37 (MQ=255)
                                                                                                     tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg                                    >  1:620096‑M1/1‑37 (MQ=255)
                                                                                                        ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                 >  1:160617‑M1/1‑34 (MQ=255)
                                                                                                          ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                               >  2:314701‑M1/1‑32 (MQ=255)
                                                                                                                  cgttttggcAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaggcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgtcgttcacaatttcgt                       <  2:936672‑M1/140‑120 (MQ=255)
                                                                                                                   aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgctcactgcgacagagtcttcaacgtattgcagatcgcaaaccgcgtcgccgttctcaatccagac                      >  2:827632‑M1/1‑23 (MQ=255)
                                                                                                                             cgccgcCTTCTGCcggcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg            <  1:390152‑M1/143‑131 (MQ=255)
                                                                                                                              gccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacttccttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgg           <  2:571981‑M1/143‑132 (MQ=255)
                                                                                                                                  cgttctGGcgtctcctgcacttcaatgatgcgcccgtccgtgtgtagcaatacgatcatgtcggtctttgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctac       <  2:197967‑M1/141‑136 (MQ=255)
                                                                                                                                    ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacggattcacaaacgcagaccgcttcgccgctcacaattccgacagaaactgcggctaccc     >  1:439123‑M1/1‑6 (MQ=255)
                                                                                                                                       tGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc  >  1:35580‑M1/1‑3 (MQ=255)
                                                                                                                                         |                                                                                                                                            
CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTC  >  NC_000913/3815721‑3815998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: