Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 49 [0] [0] 49 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)46 (0.940) 38/264 0.3 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815803‑3816080
                                                                                                                                          |                                                                                                                                           
ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcctacttttcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttccgccagcc                                                                                                                                         >  2:431617‑M2/139‑139 (MQ=255)
  gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctccacctcttacacatcaacagacaaaaaaaaagcgactcatcagtcgccttaaaaatcagtttgccagcgcccccttctgcCGTcccc                                                                                                                                       >  1:632265‑M2/137‑143 (MQ=255)
        taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcggccttcggcCGTCCCCTGCCCt                                                                                                                                 >  1:594000‑M2/131‑143 (MQ=255)
        taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtagccttaaaaatcagtttgccagagcagccttctgcCGTCCCATGCACt                                                                                                                                 >  1:414129‑M2/131‑143 (MQ=255)
         aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                <  1:763498‑M2/14‑1 (MQ=255)
         aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                >  2:390152‑M2/130‑143 (MQ=255)
              caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                                                           <  1:74907‑M2/19‑1 (MQ=255)
               aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttacaaatcagtttgccagcgccgccttctgcCGCTCCACGCACATCAatga                                                                                                                          >  2:95443‑M2/124‑143 (MQ=255)
                aattcaataaactggcgctgatatggtttcatgccttcgctcctcaccttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAatgat                                                                                                                         <  2:118864‑M2/21‑1 (MQ=255)
                   tcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccctaaaaatcagtttgccagcgccgccttctgcCGGCCCCTGCACTTCAGTGATgcg                                                                                                                      >  1:309175‑M2/120‑143 (MQ=255)
                   tcaataaactgacgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgacgtacaaatcaagttgccagagcacccttccgcCCTCCCCTACCCTTCAATGAtgca                                                                                                                      >  2:9213‑M2/120‑142 (MQ=255)
                       taaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagattgccagcgccgccttctgcCGTCCCCCGCACTTCAACGACGCgcccc                                                                                                                  >  2:146053‑M2/116‑142 (MQ=255)
                         aactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTc                                                                                                                >  2:208902‑M2/114‑143 (MQ=255)
                            tggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                             >  2:895059‑M2/111‑143 (MQ=255)
                             ggtcctcatatcgtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                            <  1:793022‑M2/34‑1 (MQ=255)
                             ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCACCCGTCTTCg                                                                                                            <  1:33669‑M2/34‑1 (MQ=255)
                               cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaacaaggcgactcatcagtcgccttaaaaatcagcttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                          <  2:122189‑M2/36‑1 (MQ=255)
                                      atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagacgactcatcagtcgccttaaaaatcagtttgcaagcgccgccttctgcCCTCCCCTGCACTTCAATGATGCTCCCGTCTTCGGTCATAACt                                                                                                   >  2:108869‑M2/101‑143 (MQ=255)
                                        ggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcattatgtGGTGCTCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTAc                                                                                                 >  1:215140‑M2/99‑143 (MQ=255)
                                          gttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                                                               <  2:145317‑M2/47‑1 (MQ=255)
                                            tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             >  1:106794‑M2/95‑143 (MQ=255)
                                                          ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtagcattaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTGTGc                                                                               >  1:264629‑M2/81‑143 (MQ=255)
                                                           tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                                                              <  1:876607‑M2/64‑1 (MQ=255)
                                                                ttgcttttcttcagacaaaaaaaaggcggctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                         <  2:755420‑M2/69‑1 (MQ=255)
                                                                ttactttgctacagacaaaaaaaaggcgactgatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                         <  2:208722‑M2/69‑1 (MQ=255)
                                                                 tacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcAGTCCACTGCACTGCAATGCTGCGCCCGTCTTCGATCACCACTCCGTCCATGTCGGtgtccgccgcccgg                                                                        >  2:172398‑M2/74‑139 (MQ=255)
                                                                    ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                     >  1:749025‑M2/71‑143 (MQ=255)
                                                                     ttttgacagacaaaaaaaaggcgcctcaccagtcgccttaaaagccagcttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                    <  2:761044‑M2/74‑1 (MQ=255)
                                                                         tacagacaaaaaaaaggcgactcatcggtcgccttaaaaaccagtgtgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                <  1:87818‑M2/78‑1 (MQ=255)
                                                                            agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCGTCACTCCGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTa                                                             >  1:83557‑M2/63‑143 (MQ=255)
                                                                              acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACGTCAATGATGCGCCCGTCTTCGCTCATCACTCCGTTCATGTCGGTCTCTCCGGCAGCGCCTTCAACGTCtt                                                           >  2:804120‑M2/61‑143 (MQ=255)
                                                                                aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGCCAGAGCCTTCAACGTATTcc                                                         >  1:796417‑M2/59‑143 (MQ=255)
                                                                                 aaaaaaaggcgactcatcggtcgccttaaaaatcagtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCa                                                        <  2:392549‑M2/86‑1 (MQ=255)
                                                                                  aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCcac                                                       >  2:541096‑M2/57‑142 (MQ=255)
                                                                                  aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGCTCACGTCGCTCTCTGCGGCAGAGTCTTCAACGTCTTCcac                                                       >  2:173423‑M2/57‑142 (MQ=255)
                                                                                     aaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc                                                    <  1:501775‑M2/90‑1 (MQ=255)
                                                                                             ctcatcagtcgccttaaaaatcagtttgccggcgccgccttctgcCGTCCCCTGCGCTTCAATGATGCGCCCGTCTGCGGGCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCCAACCg                                            >  1:524078‑M2/46‑143 (MQ=255)
                                                                                                    gtcgccttaaaaatgggtttgccagcgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGcc                                     <  2:220206‑M2/105‑1 (MQ=255)
                                                                                                     tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGTAAgacgcttgcccg                                    >  1:845086‑M2/38‑138 (MQ=255)
                                                                                                     tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                    >  1:620096‑M2/38‑143 (MQ=255)
                                                                                                        ccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                 >  1:160617‑M2/35‑143 (MQ=255)
                                                                                                          ttaaaaatcagtttgccagcgccgccttctgcCGTCTCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac                               >  2:314701‑M2/33‑143 (MQ=255)
                                                                                                                  cgttttggcagcgccgccttctgcCGTCCCCTGCACTTCAATGAGGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGTCGTTCACAATTTcgt                       <  2:936672‑M2/119‑2 (MQ=255)
                                                                                                                   agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGCTCACTGCGACAGAGTCTTCAACGTATTGCAGATCGCAAACCGCGTCGCCGTTCTCAATCCAGAc                      >  2:827632‑M2/24‑143 (MQ=255)
                                                                                                                             cgccgccttctgcCGGCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg            <  1:390152‑M2/130‑1 (MQ=255)
                                                                                                                              gccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTTCCTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCgg           <  2:571981‑M2/131‑1 (MQ=255)
                                                                                                                                  cgttctggCGTCTCCTGCACTTCAATGATGCGCCCGTCCGTGTGTAGCAATACGATCATGTCGGTCTTTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAc       <  2:197967‑M2/135‑1 (MQ=255)
                                                                                                                                    ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGGATTCACAAACGCAGACCGCTTCGCCGCTCACAATTCCGACAGAAACTGCGGCTaccc     >  1:439123‑M2/7‑142 (MQ=255)
                                                                                                                                       tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc  >  1:35580‑M2/4‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                           
AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815803‑3816080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: