New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3643087 =48 (0.720)3 (0.050) 3/268 9.9 6.0% coding (46/753 nt) rsmJ 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
?NC_000913 3643107 = 48 (0.770)coding (26/753 nt) rsmJ 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC  >  NC_000913/3642945‑3643226
                                                                                                                                              |                                                                                                                                           
gCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATaa                                                                                                                                             <  1:785489/143‑1 (MQ=255)
 cTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAg                                                                                                                                            <  2:32710/143‑1 (MQ=255)
  tCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAgg                                                                                                                                           >  1:590172/1‑143 (MQ=255)
             aagcaacaaAGATGCCGCCAAGTTTTGGCTCATCACGCATGCGCAATTCCAGATGTTACGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATAGTGCTCCAGCCCACAGCGAGCCCCCAGAACAGATAAGGCACCGTCTcca                                                                                                                                >  2:460446/4‑142 (MQ=255)
                            cgccAAGTTTTGTGTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTtcatca                                                                                                                 <  2:53364/143‑1 (MQ=255)
                                   ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCCGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTGTCATCGATTAAGc                                                                                                          >  1:186342/1‑143 (MQ=255)
                                   ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGc                                                                                                          >  1:915484/1‑143 (MQ=255)
                                    tttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                         <  2:264669/143‑1 (MQ=255)
                                    tttGGCGCATCACGCGTGCGCAATTCCAGATGTTCCGGCGGTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                         <  2:587361/143‑1 (MQ=255)
                                        gCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAtt                                                                                                     >  2:798304/1‑143 (MQ=255)
                                            atcaCGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTGATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCa                                                                                                 <  2:1107086/143‑1 (MQ=255)
                                                   ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGCCCGTCATAGTCTGTGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  1:874735/1‑143 (MQ=255)
                                                   ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  1:681074/1‑143 (MQ=255)
                                                   ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                          >  1:677353/1‑143 (MQ=255)
                                                       gcAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCa                                                                                      >  2:1063365/1‑143 (MQ=255)
                                                        cAATTCCAGATGTTCCGGCGTTAACACCAGCCCCATTACCAAAGAATCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGGTTCATCCATTAAGCAGAGTTTCACGCAATGATcgg                                                                                     >  2:258601/1‑141 (MQ=255)
                                                           ttgcAGATGTGCCGGCGTTAACACCTGCGCCATCAGGGTGTCGTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGccc                                                                                  <  1:704678/140‑1 (MQ=255)
                                                               aGATGTTCCGGCGTTAACACCAGCGCCATCCGGTTGTCTTCATCGTGCTCCAGCCCCCAGCCGGCCGCCAGAACAGATCAGGCACCGTCTCCGGTGCCCGTTTCATCAATTAAGCAGATATTCACTGACTCATCAGCCCTTac                                                                              >  2:55567/1‑142 (MQ=255)
                                                               aGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACCGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCCTCCCTTac                                                                              >  1:964581/1‑142 (MQ=255)
                                                                 aTGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATg                                                                            <  1:386083/143‑1 (MQ=255)
                                                                        ggCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCCCCAGAACAGATAACCGACCCTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCCCTGACTGATCAGCCCTTAATGCCGTAAt                                                                     >  2:424457/1‑143 (MQ=255)
                                                                         gCGTTAACCCCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCCTCAATTCAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATg                                                                    <  1:825163/143‑1 (MQ=255)
                                                                              aaCACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCa                                                               <  1:102589/143‑1 (MQ=255)
                                                                                 acCAGCGCCATCAGGGTGTCTTAATCGTGCTCCAGCCCCCGGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgca                                                            <  2:426981/143‑1 (MQ=255)
                                                                                  ccAGCGCCATCAGGTTGTCTTCATCGTGCGCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgcat                                                           <  1:831298/143‑1 (MQ=255)
                                                                                        ccATCAGGTTGTCGTCATCGAGCTCCAGCCCCCAGCGAGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCGGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAACGCTCCAgcatcgcatc                                                     <  2:115071/143‑1 (MQ=255)
                                                                                           tCAGGTTGTCTTCATGGTGCTCCAGCCCCCAGCGGGCCGTCAGAACAGATAATGCACCGTCTCCGGTGCCTGTGTCATCTATTCACCCGATTTTCACTGCATGCTCAGCCCTTAATGCCGTAATTCTCCAGCATCGCATCCAg                                                  <  2:545638/143‑1 (MQ=255)
                                                                                               gTTGTCTTCACCGTGCTCCCGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCAGCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGc                                              <  1:1106222/143‑1 (MQ=255)
                                                                                                     ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                        >  2:727592/1‑143 (MQ=255)
                                                                                                     ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                        <  2:405962/143‑1 (MQ=255)
                                                                                                     ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACGGAATGATCAGCCCTTAATGCCGTCATGCTCCGGCAGCGCGTCCAGATGCGGtgcg                                        >  1:442233/1‑140 (MQ=255)
                                                                                                         tCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCAGCGCTTCACGAc                                    >  2:348057/1‑143 (MQ=255)
                                                                                                                ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                             <  1:1051881/143‑1 (MQ=255)
                                                                                                                ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                             <  1:129400/143‑1 (MQ=255)
                                                                                                                    cccccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAGTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCgg                         >  2:764378/1‑142 (MQ=255)
                                                                                                                      cccAGCGGGCTGCCAGAACACATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGttt                       <  1:216167/143‑1 (MQ=255)
                                                                                                                       ccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTg                      <  1:798304/143‑1 (MQ=255)
                                                                                                                         aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGaa                    <  2:1017652/143‑1 (MQ=255)
                                                                                                                         aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCACCTGCGGTCCACGACCGCGGAcgcgccgtca                    >  2:1095079/1‑137 (MQ=255)
                                                                                                                           cGGGCCGCCCGAACAGATAATGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                  <  2:268568/143‑1 (MQ=255)
                                                                                                                           cGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                  >  2:908988/1‑143 (MQ=255)
                                                                                                                            gggCCGCCAGAACAGATAATGCACCGTCTCCTGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAg                 <  1:1185290/143‑1 (MQ=255)
                                                                                                                               ccgtccgAACAGATACTGCACCGTCTCCGGGGCCTGCTTCATCAACTAAGCAGATTTTCACTGACTGATCAGCCCTGACTGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATc              <  2:163676/137‑1 (MQ=255)
                                                                                                                               ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGACGCGTTTGCACAGacc              >  1:884169/1‑141 (MQ=255)
                                                                                                                                           aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  2:677353/143‑1 (MQ=255)
                                                                                                                                           aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  2:681074/143‑1 (MQ=255)
                                                                                                                                           aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc  <  2:874735/143‑1 (MQ=255)
                                                                                                                                           aTAAGGCACCGTCTCCGGTGCCTGGTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCTTGCATCGCATCCAACTGCGGTTCACGACCACGGAAGCGTCTGGACAGATCCATCGGCtcttc  >  2:418171/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC  >  NC_000913/3642945‑3643226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.