New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3643087 =	48 (0.720)	3 (0.050)	3/268	9.9	6.0%	coding (46/753 nt)	rsmJ	16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
	?	NC_000913	3643107 =	48 (0.770)					coding (26/753 nt)	rsmJ	16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAAT  >  NC_000913/3642973‑3643247                                                                                                                                       |                                                                                                                                             cgccAAGTTTTGTGTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTtcatca                                                                                                                                      <  2:53364/143‑1 (MQ=255)        ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCCGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTGTCATCGATTAAGc                                                                                                                               >  1:186342/1‑143 (MQ=255)        ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGc                                                                                                                               >  1:915484/1‑143 (MQ=255)         tttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                                              <  2:264669/143‑1 (MQ=255)         tttGGCGCATCACGCGTGCGCAATTCCAGATGTTCCGGCGGTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa                                                                                                                              <  2:587361/143‑1 (MQ=255)             gCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAtt                                                                                                                          >  2:798304/1‑143 (MQ=255)                 atcaCGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTGATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCa                                                                                                                      <  2:1107086/143‑1 (MQ=255)                        ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGCCCGTCATAGTCTGTGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                                               >  1:874735/1‑143 (MQ=255)                        ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                                               >  1:681074/1‑143 (MQ=255)                        ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg                                                                                                               >  1:677353/1‑143 (MQ=255)                            gcAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCa                                                                                                           >  2:1063365/1‑143 (MQ=255)                             cAATTCCAGATGTTCCGGCGTTAACACCAGCCCCATTACCAAAGAATCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGGTTCATCCATTAAGCAGAGTTTCACGCAATGATcgg                                                                                                          >  2:258601/1‑141 (MQ=255)                                ttgcAGATGTGCCGGCGTTAACACCTGCGCCATCAGGGTGTCGTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGccc                                                                                                       <  1:704678/140‑1 (MQ=255)                                    aGATGTTCCGGCGTTAACACCAGCGCCATCCGGTTGTCTTCATCGTGCTCCAGCCCCCAGCCGGCCGCCAGAACAGATCAGGCACCGTCTCCGGTGCCCGTTTCATCAATTAAGCAGATATTCACTGACTCATCAGCCCTTac                                                                                                   >  2:55567/1‑142 (MQ=255)                                    aGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACCGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCCTCCCTTac                                                                                                   >  1:964581/1‑142 (MQ=255)                                      aTGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATg                                                                                                 <  1:386083/143‑1 (MQ=255)                                             ggCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCCCCAGAACAGATAACCGACCCTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCCCTGACTGATCAGCCCTTAATGCCGTAAt                                                                                          >  2:424457/1‑143 (MQ=255)                                              gCGTTAACCCCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCCTCAATTCAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATg                                                                                         <  1:825163/143‑1 (MQ=255)                                                   aaCACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCa                                                                                    <  1:102589/143‑1 (MQ=255)                                                      acCAGCGCCATCAGGGTGTCTTAATCGTGCTCCAGCCCCCGGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgca                                                                                 <  2:426981/143‑1 (MQ=255)                                                       ccAGCGCCATCAGGTTGTCTTCATCGTGCGCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgcat                                                                                <  1:831298/143‑1 (MQ=255)                                                             ccATCAGGTTGTCGTCATCGAGCTCCAGCCCCCAGCGAGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCGGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAACGCTCCAgcatcgcatc                                                                          <  2:115071/143‑1 (MQ=255)                                                                tCAGGTTGTCTTCATGGTGCTCCAGCCCCCAGCGGGCCGTCAGAACAGATAATGCACCGTCTCCGGTGCCTGTGTCATCTATTCACCCGATTTTCACTGCATGCTCAGCCCTTAATGCCGTAATTCTCCAGCATCGCATCCAg                                                                       <  2:545638/143‑1 (MQ=255)                                                                    gTTGTCTTCACCGTGCTCCCGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCAGCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGc                                                                   <  1:1106222/143‑1 (MQ=255)                                                                          ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                                             <  2:405962/143‑1 (MQ=255)                                                                          ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                                             >  2:727592/1‑143 (MQ=255)                                                                          ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACGGAATGATCAGCCCTTAATGCCGTCATGCTCCGGCAGCGCGTCCAGATGCGGtgcg                                                             >  1:442233/1‑140 (MQ=255)                                                                              tCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCAGCGCTTCACGAc                                                         >  2:348057/1‑143 (MQ=255)                                                                                     ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                                                  <  1:1051881/143‑1 (MQ=255)                                                                                     ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                                                  <  1:129400/143‑1 (MQ=255)                                                                                         cccccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAGTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCgg                                              >  2:764378/1‑142 (MQ=255)                                                                                           cccAGCGGGCTGCCAGAACACATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGttt                                            <  1:216167/143‑1 (MQ=255)                                                                                            ccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTg                                           <  1:798304/143‑1 (MQ=255)                                                                                              aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGaa                                         <  2:1017652/143‑1 (MQ=255)                                                                                              aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCACCTGCGGTCCACGACCGCGGAcgcgccgtca                                         >  2:1095079/1‑137 (MQ=255)                                                                                                cGGGCCGCCCGAACAGATAATGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                                       <  2:268568/143‑1 (MQ=255)                                                                                                cGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                                       >  2:908988/1‑143 (MQ=255)                                                                                                 gggCCGCCAGAACAGATAATGCACCGTCTCCTGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAg                                      <  1:1185290/143‑1 (MQ=255)                                                                                                    ccgtccgAACAGATACTGCACCGTCTCCGGGGCCTGCTTCATCAACTAAGCAGATTTTCACTGACTGATCAGCCCTGACTGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATc                                   <  2:163676/137‑1 (MQ=255)                                                                                                    ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGACGCGTTTGCACAGacc                                   >  1:884169/1‑141 (MQ=255)                                                                                                                aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc                       <  2:677353/143‑1 (MQ=255)                                                                                                                aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc                       <  2:681074/143‑1 (MQ=255)                                                                                                                aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc                       <  2:874735/143‑1 (MQ=255)                                                                                                                aTAAGGCACCGTCTCCGGTGCCTGGTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCTTGCATCGCATCCAACTGCGGTTCACGACCACGGAAGCGTCTGGACAGATCCATCGGCtcttc                       >  2:418171/1‑143 (MQ=255)                                                                                                                 tgatgCACCTTCTCTGATGCCTGTTGCCTCCATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGCCCACCTAAGCGTTTTAACAGATCCATCGGCtcttct                      <  2:797250/139‑1 (MQ=255)                                                                                                                        ccGGCTCCGGTGCCTGCTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGc               <  1:960626/143‑1 (MQ=255)                                                                                                                             tcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCCCGACCACGGAAGCGTTTGAACCGATCCATCGGCTCTTCTGAACCCCCCCgg          >  2:1088176/1‑143 (MQ=255)                                                                                                                             tcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACgg          <  1:431745/143‑1 (MQ=255)                                                                                                                               cGGTGCCTGTTTCATCAAGTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCt        <  1:249661/143‑1 (MQ=255)                                                                                                                                 gagcatGTTTCACCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGTGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCa      <  1:1063365/138‑1 (MQ=255)                                                                                                                                     cTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGCAt  >  1:415749/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                             CGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAAT  >  NC_000913/3642973‑3643247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.