| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3227830 | 63 (0.950) | 3 (0.050) | 3/268 | 9.9 | 4.7% | coding (30/1071 nt) | ygjJ | putative periplasmic protein |
| ? | NC_000913 | = 3227835 | 62 (0.990) | coding (35/1071 nt) | ygjJ | putative periplasmic protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGATA > NC_000913/3227699‑3227976 | ccTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTCTATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGctct < 1:872906/143‑1 (MQ=255) ctTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGcc < 1:908476/143‑1 (MQ=255) tGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGtttt < 1:66382/143‑1 (MQ=255) gggATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGtttt < 1:441022/142‑1 (MQ=255) ggATGAGGAGAGGGAAAATAGTTTCTGCCGTTATATTTTTATAATTACAACTATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCCCTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTg > 1:881951/1‑143 (MQ=255) tGAGGAGAGGGAAAAGAGTTTCTGCCTTTATATTGTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAAGCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTa < 2:622619/143‑1 (MQ=255) aggggAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTGTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACg < 2:965897/143‑1 (MQ=255) agGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCCGAGCATTACTTGCTCTGCCGTTTTGCTACGCCttt > 1:930079/1‑143 (MQ=255) ggAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCTTTTTTCTACGCCTTTTc > 1:920930/1‑143 (MQ=255) aaaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTCGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTg > 1:171639/1‑143 (MQ=255) aaaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTg < 2:264309/143‑1 (MQ=255) aaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGc < 1:511653/143‑1 (MQ=255) atcgTTTCTGCCCTTATATTCTTATAAGTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCgg < 2:226252/140‑1 (MQ=255) tAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGc < 2:469736/143‑1 (MQ=255) tttCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTTTTTCGGTATAATTTTAAGACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTCCCGTTTTGCTACGCCGTTTCTTCGGCacg > 2:533569/1‑141 (MQ=255) ccTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGgcgagca > 1:396996/1‑140 (MQ=255) cTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAgaagaa < 1:802827/143‑1 (MQ=255) cTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAgaagaa > 1:386976/1‑143 (MQ=255) tttACATCTTTATAATTACACCGACAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGaagaag < 1:132513/143‑1 (MQ=255) ttATATTTTTATAATTACAACGATAAAAGGCTGTACTTTGTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGc < 1:19092/143‑1 (MQ=255) atatTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATTACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAc < 2:1044292/143‑1 (MQ=255) atatTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAc < 1:575609/143‑1 (MQ=255) ttttATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGATTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTcc > 1:948954/1‑143 (MQ=255) ttttATAATTACAACGATAAAAGGCTGTACTTGTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTcc < 1:288787/143‑1 (MQ=255) ttttAAAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGCAGAGGCACGTcc > 1:18614/1‑143 (MQ=255) taATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTACCACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGGCGAAGCCCGTCCGGcct > 1:232803/1‑141 (MQ=255) caaTTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCGGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAg < 1:85181/142‑1 (MQ=255) aTTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGac > 1:800006/1‑142 (MQ=255) ttACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGCAGCACGTCCGGCAGAAc > 1:907809/1‑143 (MQ=255) aaCGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCCCTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGCCCGCCAGCACATga > 2:448546/1‑143 (MQ=255) gaaaaaaGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATgacga < 2:660677/140‑1 (MQ=255) tAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAGTGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGaca > 1:957033/1‑143 (MQ=255) ggCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACaaaa < 1:973562/143‑1 (MQ=255) gTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCAACAGAATGGGTACGCCAATTCAGCGTCATGAGAAGAAGCACGTCCGGCAGCACATCACGCCCCAAacacac > 1:936984/1‑143 (MQ=255) tcTTTTTCTTCAGCTCATGGATTAACACAATGAAATTAACCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAGCATGACGACACAAAAACAccc < 1:307313/142‑1 (MQ=255) tAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCt < 1:721933/143‑1 (MQ=255) gCTCATGGAGTAACACAATGAAATTAATCACTGCACCATGCAGGGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCg < 2:224737/143‑1 (MQ=255) cTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATGACCGCGa > 1:623379/1‑143 (MQ=255) cTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCGACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACACGACGACACGACAACACCCGCAATCACCCCgc > 2:602895/1‑142 (MQ=255) tCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCgcc > 2:218368/1‑141 (MQ=255) tCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGAc > 2:90865/1‑143 (MQ=255) cATGGATTAACACAAGGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACa < 1:1141727/143‑1 (MQ=255) aTGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACAt > 1:25121/1‑143 (MQ=255) gATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGACGTTTTGCTACGCCTTATCTGCGGCAGGAGCAGAAGCACGTCCGGCAGAACATGACGACACAAAAACAGCCGCAAGTACCACGACAtctt > 2:491206/1‑143 (MQ=255) aTTAACACAATGAAATTAATCACTGAACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGCGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACAtcttc > 1:303245/1‑143 (MQ=255) tAACACAATGAAATTACTCACTGCACCAGGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTCCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTTCCTCGACATCTtctc < 2:796562/143‑1 (MQ=255) tAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTtctc < 2:386976/143‑1 (MQ=255) aaCACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCACTTCCCTCGACATCTTCTcc > 1:299584/1‑143 (MQ=255) acaATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACTTCTTCTCCTTc > 1:34843/1‑143 (MQ=255) caATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCa > 2:863699/1‑143 (MQ=255) aTGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAATCACCAGCAATTACCTCGACATCTTCGCCTTCAtt > 1:312209/1‑143 (MQ=255) aaTTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGt > 1:286831/1‑143 (MQ=255) ttAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGCTTTGCTACGCCTTTTCTGCGGCAGGACAACAACCACGTCCGGCAGAACATGACGACACACAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGttt < 1:856993/143‑1 (MQ=255) tCACTGCACCATGCAGAGCATTTCTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCCTTTTTAc > 2:489969/1‑143 (MQ=255) cACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCGGGAGAAGAAGCACGTGCGGCAGAACATGGCGCCACAAAAACACCCGCAATTACGTCGACATCTTCTCGCTCACTTCGTTGTTCCg > 1:248385/1‑143 (MQ=255) cttGCAGCGCATTCCTTGCTCCCCCGTGTTGCTACGCCTTTTCTGCTGCAGTAGAAGAAGCACGTCCGGCAGAACATGACGACACAACAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTa < 1:242697/141‑1 (MQ=255) tGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 2:286831/143‑1 (MQ=255) tGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACAAAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 1:1010977/143‑1 (MQ=255) cgccgagCATTACTTGCTCTGCCGGTTTGCTACGCCTTTTCTGCGGCAGGACACGAATCACTTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 2:1041240/139‑1 (MQ=255) cATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTtggt > 2:65040/1‑143 (MQ=255) cATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTtggt < 1:716413/143‑1 (MQ=255) tACTTGCTCTGCCGCTTTCCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGa < 2:930079/143‑1 (MQ=255) cTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGata < 1:90865/143‑1 (MQ=255) | CCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGATA > NC_000913/3227699‑3227976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |