New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3845531 =	31 (0.600)	41 (0.850)	37/262	0.3	56.2%	coding (1568/1767 nt)	adeD	cryptic adenine deaminase
	?	NC_000913	= 3992760	35 (0.730)					coding (1608/2547 nt)	cyaA	adenylate cyclase

AGCCCCTGACTGGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3845681‑3845531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcggtgcAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  NC_000913/3992760‑3992623                                                                                                                                                                                                                                                                                                    AGCCCCCGACTGGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATCGTACGCCGGTCGTGTAACGGCCCGCATTCACTGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGT                                                                                                                                                    <  1:700608/143‑1   CCCCTGACTGGTTAGTTTTAGCGCGGGGATCACGG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGT                                                                                                                                                  <  2:902722/143‑1      gatACTGGGTAGTTATAGTCCGCGGCTCATGG‑TCAGAGAAAGAAACGCCATCTGAATAATCGGCTCAGCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTGCCGCCAGCGACTGCGCCGTGTCGG                                                                                                                                               <  1:303399/140‑1       TGACTGGTGAGTTTTAGCGCGGGGATCGCTGTGTCGTCATCG‑TGCGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGT                                                                                                                                              <  2:673598/143‑1         ACTGGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAACCGCCTTCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC                                                                                                                                            <  2:44900/143‑1         ACTGGTGAGTTTCAGCGCGGCGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC                                                                                                                                            <  1:148648/143‑1          CTGGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCA                                                                                                                                           >  1:6329/1‑143            GGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGG                                                                                                                                         <  1:641380/143‑1                AGTTGTAGCGGGGGGATCGCTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATGCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAG                                                                                                                                     <  1:145844/143‑1                  TTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAACCGGCTCATCGGGTAACGGACCGCGTTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCG                                                                                                                                   >  1:219654/1‑143                        CGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGG                                                                                                                             >  1:102136/1‑143                        CGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGG                                                                                                                             >  2:386864/1‑143                         GCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGG                                                                                                                            >  1:950785/1‑143                         GCGGGAATCACTG‑GCAGAGAAAGAAGCGCCGTCTGAATAAACGGCTCAGCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGG                                                                                                                            <  1:413087/143‑1                                TCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCCCGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGGCGTGTCGGTGCTGGTACGCGCAGCGGGGAATGGT                                                                                                                     >  1:389659/1‑143                                 CACTG‑GCAGAGAAAGAAACGGCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTG                                                                                                                    <  2:340349/143‑1                                 CACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTG                                                                                                                    <  1:456980/143‑1                                    TG‑GCAGAGAACGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGA                                                                                                                 <  1:278884/143‑1                                            ggAAGAAACGCCATCTGAATAAGCGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCG                                                                                                          <  2:448798/141‑1                                             AAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGG                                                                                                         >  1:582587/1‑143                                                GAAAGGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCGAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGA                                                                                                      <  1:148051/143‑1                                                 AAACGCCTTCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGAC                                                                                                     <  2:102136/143‑1                                                 AAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTACGCGCAGCGGGAAATGGTGCGACACGTCGGCGgc                                                                                                     >  1:171785/1‑141                                                     GCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTCTCACGGCGCCAATTTGTTCCGCCAGCGACTGCGCCGCGTCGGTGCAGGTCAGCGCAGCGGGAACTGGTGCGCCACGTCGGCGACCATC                                                                                                 >  2:175898/1‑143                                                        ATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGACATGGTGCGACACGTCGGCGCCCATCTCC                                                                                              >  1:455934/1‑143                                                          CTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGGAATGGTGCGACACGTCGGCGACCAGCTCCTG                                                                                            >  1:299249/1‑143                                                                    gggtgagCGGGTAAAGGACCGCGATGGCGGGCGGCGGCGTGCAAGGCGGCAAGTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGC                                                                                  <  1:74487/136‑1                                                                       aagcCGGGTAACGGACCGTGCTCACGGGCGGCTGCGTTCTAGGCGTGAATTTGTGCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCGGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAA                                                                               <  2:610436/139‑1                                                                              GTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTCTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCCCCTGCCACCTACGCCGCTCGACAc                                                                        >  1:137599/1‑142                                                                                  CGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCC                                                                    >  2:192468/1‑143                                                                                      CCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGCCCATCTCCTGCAACTTAGGCAAATCGACACTGCCGTTA                                                                >  2:585440/1‑143                                                                                                    GGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACCCGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAA                                                  <  1:920195/143‑1                                                                                                     GCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAA                                                 <  1:430203/143‑1                                                                                                     GCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAA                                                 >  2:23140/1‑143                                                                                                      CGGCTTTCAAGGCGTCAATTTGCTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAAC                                                <  1:301209/143‑1                                                                                                        cCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGG                                              <  1:274395/142‑1                                                                                                        GCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCCAATCGACAATGCCGTTACCCTTAATATACAGACGG                                              >  1:163762/1‑143                                                                                                           TTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGCTACCTTTAATATACAAACAGGTG                                           >  1:719705/1‑143                                                                                                              AAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGAAACTAAAGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGC                                        >  2:421519/1‑143                                                                                                                      AATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTGATATACAAACGGGTGCGCGAGGTCgg                                >  1:329252/1‑141                                                                                                                              CCGCCAGCGACTGCGGCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGT                        <  2:166992/143‑1                                                                                                                              CCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAAGGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGT                        <  1:192468/143‑1                                                                                                                               CGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTT                       <  2:582587/143‑1                                                                                                                                 CCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAA                     >  1:156982/1‑143                                                                                                                                  CAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACACACGGGTGCGCGAGGTCAGCAGGCCGTTAAA                    >  2:557679/1‑143                                                                                                                                      ggaccCGCCGGGGCGGTGCGGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCAT                <  2:325086/138‑1                                                                                                                                              CGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTTATATACAAACGGGTACGCGAGATAAGCAGGCCGTTAAACAATGCACACGa        >  1:310918/1‑142                                                                                                                                               GTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGGCCATCTCCTGCAACTTAGGCAAATCGCCACTGCCGTTACCTTTAATCTACAAAAGGGTGCCCGCGGCACGCCGGCCGTAAAACCACACCCACGCC       >  2:923849/1‑143                                                                                                                                                   CGGTGCACGTAAGCGCAGCGGGAAGTGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCA   <  1:273610/143‑1                                                                                                                                                    GGTGCAGGTAAGCCCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  1:419586/143‑1                                                                                                                                                                                                                                                                                                    AGCCCCTGACTGGTTAGTTTTAGCGCGGGGATCACTG‑GCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3845681‑3845531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcggtgcAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  NC_000913/3992760‑3992623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.