New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3845531 =31 (0.600)41 (0.850) 37/262 0.3 56.2% coding (1568/1767 nt) adeD cryptic adenine deaminase
?NC_000913 = 3992760 35 (0.730)coding (1608/2547 nt) cyaA adenylate cyclase

CATAATATTGTGGTGATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGT  >  NC_000913/3845389‑3845673
                                                                                                                                              |                                                                                                                                              
cATAATATTGTGGTGATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTCCAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAg                                                                                                                                                >  1:121013/1‑143 (MQ=255)
  taataTTGTGGTGATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATgcgcg                                                                                                                                              >  1:486532/1‑142 (MQ=255)
    ctggtggcgtgggcatggtttaacggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgggcttacctGCAcc                                                                                                                                            <  1:419586‑M1/5‑1 (MQ=255)
    atatTGTGGTGATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGGTGAGCAcc                                                                                                                                            >  1:377397/1‑143 (MQ=255)
     tggtggcgtgggcatggtttaacggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccacttcccgctgcgcttacgtGCACCg                                                                                                                                           <  1:273610‑M1/6‑1 (MQ=255)
      atTGTGGTGGTCGGTCGCAGTGTCGGAGAGTTGTCTCTGGTGTTCAATCAGGTGTTTCAGGAGGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCACTGCCGGGCTGATGAGCACCGa                                                                                                                                          <  1:882716/143‑1 (MQ=255)
        ggtggtgATCGGTCGCAGTGCCGAAGAGGTGGCGCTGGCGGTCAGGCAGGTGATTCAGGATGGCGGCGTGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTATCCATTGCCGGGCTGATGAGCACCGaca                                                                                                                                        <  2:446365/142‑1 (MQ=255)
         ggcgtgggtgtggttttacggccggcgtgccgcgggcacccttttgtagattaaaggtaacggcagtggcgatttgcctaagttgcaggagatggccgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGacac                                                                                                                                       >  2:923849‑M1/134‑143 (MQ=255)
          tggtgATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCGCCGACACg                                                                                                                                      >  1:62414/1‑143 (MQ=255)
          tcgtgtgcattgtttaacggcctgcttatctcgcgtacccgtttgtatataaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACg                                                                                                                                      >  1:310918‑M1/133‑143 (MQ=255)
            gtgATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGAGTGGTACGTAACGGCCAGGTACAAACTCATCTGCCGTTACCCAGTGCCGGGCTGATGAGCACCGCCACGgc                                                                                                                                    >  1:382799/1‑143 (MQ=255)
            gggagcGGTCGGAGTGCCGAGGAGAGGGCGCGGGCGGGCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGgc                                                                                                                                    <  1:766731/138‑1 (MQ=255)
                  atggtttaacggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacccGCACCGccccggcgggtcc                                                                                                                              <  2:325086‑M1/19‑6 (MQ=255)
                      tttaacggcctgctgacctcgcgcacccgtgtgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTg                                                                                                                          >  2:557679‑M1/121‑143 (MQ=255)
                       ttaacggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTgg                                                                                                                         >  1:156982‑M1/120‑143 (MQ=255)
                         gTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCCGTCGCTGGCg                                                                                                                       >  1:704556/1‑143 (MQ=255)
                         aacggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCg                                                                                                                       <  2:582587‑M1/26‑1 (MQ=255)
                          acggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccctttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCgg                                                                                                                      <  1:192468‑M1/27‑1 (MQ=255)
                          acggcctgctgacctcgcgcacccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGCCGCAGTCGCTGGCgg                                                                                                                      <  2:166992‑M1/27‑1 (MQ=255)
                             cGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAAc                                                                                                                   <  1:618338/143‑1 (MQ=255)
                                  ccgacctcgcgcacccgtttgtatatcaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAAtt                                                                                                              >  1:329252‑M1/109‑143 (MQ=255)
                                          gcgcacccgtttgtatattaaaggtaacggcattgtcgatttgctttagtttcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCtt                                                                                                      >  2:421519‑M1/101‑143 (MQ=255)
                                             cacctgtttgtatattaaaggtagcggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGaa                                                                                                   >  1:719705‑M1/98‑143 (MQ=255)
                                              gtgTCACTCAGGGGATTCAGGATGGCGGCGGGCTGGGCGTGGTACGTAACGGCCAGGTACAAAGTCAGTTGCGGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGaaa                                                                                                  <  2:311988/141‑1 (MQ=255)
                                                ccgtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAagg                                                                                                <  1:274395‑M1/49‑2 (MQ=255)
                                                ccgtctgtatattaagggtaacggcattgtcgattggcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAgc                                                                                                >  1:163762‑M1/95‑143 (MQ=255)
                                                 tCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCCTCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAACTGACGCCTTGAAAgcc                                                                                               >  2:437629/1‑143 (MQ=255)
                                                  gtttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAGCAAATTGACGCCTTGAAAgccg                                                                                              <  1:301209‑M1/51‑1 (MQ=255)
                                                   tttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAgccgc                                                                                             <  1:430203‑M1/52‑1 (MQ=255)
                                                   tttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAgccgc                                                                                             >  2:23140‑M1/92‑143 (MQ=255)
                                                   aaTCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAgccgc                                                                                             >  1:630136/1‑143 (MQ=255)
                                                    ttgtatattaaaggtaacggcattgtcgatttgcctaagttgcaggagatggtcgccgacgggtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAgccgcc                                                                                            <  1:920195‑M1/53‑1 (MQ=255)
                                                        ggTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGCCGCCTTGCAAGCCGCCGccc                                                                                        >  2:268819/1‑143 (MQ=255)
                                                         gTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCg                                                                                       >  1:465572/1‑143 (MQ=255)
                                                                  taacggcagtgtcgatttgcctaagttgcaggagatgggcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCgg                                                                              >  2:585440‑M1/77‑143 (MQ=255)
                                                                      ggcattgtcgatttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCg                                                                          >  2:192468‑M1/73‑143 (MQ=255)
                                                                          gtgtcgagcggcgtaggtggcaggggatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGAGACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTAc                                                                      >  1:137599‑M1/69‑143 (MQ=255)
                                                                           gggCTGTGCGTGGTACGGATCGGCCAGGTACAAAGTCATCTGCCGCTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTAcc                                                                     <  2:686342/143‑1 (MQ=255)
                                                                              cTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCgc                                                                  >  1:733971/1‑142 (MQ=255)
                                                                               ggtgCGGGGTCGGTGACGGCCATTGACCGAGTGATGTGCGGTTACCCAGTGCGGGGCTGATGAGCACGTACATGGCGCAGTGGCTGGCGGAAGAGATGGACGCCTTGAAGGCCGCCGCGCGTGAATGCGGTCCGTTACCCGAt                                                                 <  2:621583/142‑1 (MQ=255)
                                                                                gtgCGTCGGACGTGGCGTCCAGGTACAACGTCAGCTGCCGGTCCCCATTGCCGCGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATg                                                                <  2:124312/143‑1 (MQ=255)
                                                                                 tttgcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgccgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGCACAAATTCACGCCTAGAACGCAGCCGCCCGTGAGCACGGTCCGTTacccggctt                                                               <  2:610436‑M1/82‑5 (MQ=255)
                                                                                 tgCGTAGTGCGTAACGGCCAGGTACAAAGACAGCTGCCGTTACCCAATGCCGGGCTGATGAGCACAGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGa                                                               <  1:146605/143‑1 (MQ=255)
                                                                                    gcctaagttgcaggagatggtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAACTTGCCGCCTTGCACGCCGCCGCCCGCCATCGCGGTCCtttacccgctcaccc                                                            <  1:74487‑M1/85‑8 (MQ=255)
                                                                                     tGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGATGGCGACAGGGTGAGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTCCCCGGTGCGCCg                                                           >  1:440343/1‑143 (MQ=255)
                                                                                         aCGTACCGGCCAGGTACAAAGTCATCTGCCCTTCCCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTa                                                       <  1:927789/143‑1 (MQ=255)
                                                                                            tAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTGTATTc                                                    >  2:839574/1‑143 (MQ=255)
                                                                                              caggagctggtcgccgacgtgtcgcaccattccccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAg                                                  >  1:299249‑M1/49‑143 (MQ=255)
                                                                                                ggagatgggcgccgacgtgtcgcaccatgtcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGAt                                                >  1:455934‑M1/47‑143 (MQ=255)
                                                                                                   gatggtcgccgacgtggcgcaccagttcccgctgcgctgacctGCACCGACGCGGCGCAGTCGCTGGCGGAACAAATTGGCGCCGTGAGAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGc                                             >  2:175898‑M1/44‑143 (MQ=255)
                                                                                                      gTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGCTTATTCAGACGGCGtt                                          >  1:14435/1‑143 (MQ=255)
                                                                                                       gtcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGAAGGCGttt                                         <  2:102136‑M1/104‑1 (MQ=255)
                                                                                                       gccgccgacgtgtcgcaccatttcccgctgcgcgtacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGttt                                         >  1:171785‑M1/40‑143 (MQ=255)
                                                                                                        tcgccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTCGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCCtttc                                        <  1:148051‑M1/105‑1 (MQ=255)
                                                                                                        aCAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTCTTCAGATGGCGtttc                                        >  1:636018/1‑143 (MQ=255)
                                                                                                           ccgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGtttcttt                                     >  1:582587‑M1/36‑143 (MQ=255)
                                                                                                            cgacgtgtcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGCTTATTCAGATGGcgtttcttcc                                    <  2:448798‑M1/109‑3 (MQ=255)
                                                                                                            aGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCAGTGAATGCGGTCCGTTACCCGATGAGACGTGTCTTCAGATTGCGctcctttc                                    >  1:809756/1‑143 (MQ=255)
                                                                                                              tCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTtctc                                  >  1:107102/1‑143 (MQ=255)
                                                                                                               cctCTGCCGGCACCCATTGCCGGGCTGATGAGCACCGACACCGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTctct                                 <  2:892464/141‑1 (MQ=255)
                                                                                                                   tcgcaccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCGTTCTCTGCCa                             <  1:278884‑M1/116‑1 (MQ=255)
                                                                                                                      caccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTg                          <  1:456980‑M1/119‑1 (MQ=255)
                                                                                                                      caccatttcccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGCCGTTTCTTTCTCTGCCAGTg                          <  2:340349‑M1/119‑1 (MQ=255)
                                                                                                                       accattccccgctgcgcgtaccaGCACCGACACGCCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGGGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGa                         >  1:389659‑M1/24‑143 (MQ=255)
                                                                                                                              cccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGCTGAGCCGTTTATTCAGACGGCGCTTCTTTCTCTGCCAGTGATTCCcgc                  <  1:413087‑M1/127‑1 (MQ=255)
                                                                                                                              cccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCcgc                  >  1:950785‑M1/17‑143 (MQ=255)
                                                                                                                              aTTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGCTTGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCcgc                  >  1:772455/1‑143 (MQ=255)
                                                                                                                               ccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCcgcg                 >  2:386864‑M1/16‑143 (MQ=255)
                                                                                                                               ccgctgcgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCcgcg                 >  1:102136‑M1/16‑143 (MQ=255)
                                                                                                                                     cgcttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAACGCGGTCCGTTACCCGATGAGCCGGTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTaaaa           >  1:219654‑M1/10‑143 (MQ=255)
                                                                                                                                       cttacctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGCATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGCGATCCCCCCGCTACAACt         <  1:145844‑M1/136‑1 (MQ=255)
                                                                                                                                       cTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACt         >  1:639690/1‑143 (MQ=255)
                                                                                                                                           cctGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAAcc     <  1:641380‑M1/140‑1 (MQ=255)
                                                                                                                                             tGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAg   >  1:6329‑M1/2‑143 (MQ=255)
                                                                                                                                             aGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACCCCTTGAAAGCCGCCGCCCGTGAATGCGGACCGTTACCCGATGAGCCGCTTATTCCGCTGGCGCGTCTCTCTCTGCCAGCCATCCCCGCGCCAACACTAACCa  >  2:218119/1‑142 (MQ=255)
                                                                                                                                              GCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCGCCGCGCTGAAACTCACCAGt  <  1:148648‑M1/143‑1 (MQ=255)
                                                                                                                                              GCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGAAGGCGGTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGt  <  2:44900‑M1/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
CATAATATTGTGGTGATCGGTCGCAGTGCCGAAGAGATGGCGCTGGCGGTCAATCAGGTGATTCAGGATGGCGGCGGGCTGTGCGTGGTACGTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGT  >  NC_000913/3845389‑3845673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.