Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,024,155 IS5 (+) +4 bp coding (188‑191/624 nt) rcsA → transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2024155 =0 (0.000)60 (1.160) 49/282 0.1 100% coding (188/624 nt) rcsA transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 20241580 (0.000)77 (1.480) 54/282 0.0 100% coding (191/624 nt) rcsA transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 141 total aligned reads displayed.

ACCGGGTATCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAA  >  NC_000913/2024016‑2024300
                                                                                                                                              |                                                                                                                                              
 ccGGGTATCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAg                                                                                                                                               <  2:185079‑M1/143‑2 (MQ=255)
 ccGGGTATCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTACCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGCTTATTAATGAGGCCTGTTTCATCCACGATGCTCCTaat                                                                                                                                               >  2:881157/1‑142 (MQ=255)
  cGGGTATCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCTTTCAGTGGTGTTTATTAATGAGGACTCTTTCATCCACGATGCTGCTAAgg                                                                                                                                              >  2:104064‑M1/1‑141 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaagtgactgaggcagccgagaagaatttccccgcttcttcgcaccttacCTAACa                                                                                                                                              <  1:917984‑M1/6‑1 (MQ=255)
      cgccttaaatggcggagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCa                                                                                                                                          >  1:707287‑M1/134‑143 (MQ=255)
        tCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtg                                                                                                                                        >  1:899298‑M1/1‑135 (MQ=255)
        ccttgaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGc                                                                                                                                        >  2:349862‑M1/132‑143 (MQ=255)
         cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCg                                                                                                                                       <  2:284337‑M1/13‑1 (MQ=255)
           gTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcga                                                                                                                                     >  2:743279‑M1/1‑132 (MQ=255)
               tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccgcgcttattccaaccttccCTAACAGTCAGCGTCTCaa                                                                                                                                 <  2:893549‑M1/19‑1 (MQ=255)
               tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCaa                                                                                                                                 >  1:667116‑M1/125‑143 (MQ=255)
               aGTAGAGGTGTTTGAAAATGATTAATCAACGACATTGAAACCGTTGATTTCCTTGCCATAGCTTGTGATTCACAGTGCCCTTCAGTGGTGTGTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaa                                                                                                                                 <  1:125627‑M1/143‑16 (MQ=255)
                ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAg                                                                                                                                <  1:382434‑M1/20‑1 (MQ=255)
                   gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTAACAAGcta                                                                                                                             <  2:655686‑M1/23‑2 (MQ=255)
                    aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCtca                                                                                                                            <  1:298701‑M1/24‑1 (MQ=255)
                      gggTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTGCAGTGGGGTTTATTAATGAGGACTGTTTCATCCACGACGCTACTCAggaaggcgcgaccaagtccctg                                                                                                                          >  2:845740‑M1/1‑121 (MQ=255)
                          tAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatat                                                                                                                      <  2:411485‑M1/143‑27 (MQ=255)
                            aaaaaaGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatga                                                                                                                    >  1:785681‑M1/1‑115 (MQ=255)
                                    aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattctcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATcc                                                                                                            >  2:577497‑M1/104‑143 (MQ=255)
                                    aagcggattcaaggcatttacgggagaaaagatcggctcaatcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATGAATCAACATcc                                                                                                            >  2:50513‑M1/104‑143 (MQ=255)
                                      gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcacaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCa                                                                                                          <  1:451822‑M1/42‑1 (MQ=255)
                                            tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgagatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGt                                                                                                    >  1:489219‑M1/96‑143 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcgtattcgcaccttccATAACAGTCAGCGGATCAAGCTCATCATTAATCAACATACCAAtacggta                                                                                                  <  2:771667‑M1/50‑4 (MQ=255)
                                              aaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagtcgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGtta                                                                                                  >  2:471143‑M1/94‑143 (MQ=255)
                                               cATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                 <  1:132323‑M1/143‑48 (MQ=255)
                                                     aaCCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTCTATTAATGAGGACTGTCTCACCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcacgtttgtcatctggaggcat                                                                                           >  2:412736‑M1/1‑90 (MQ=255)
                                                        cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGttt                                                                                        >  1:888472‑M1/84‑143 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTAtcgtcgt                                                                                       <  1:76957‑M1/61‑4 (MQ=255)
                                                           tgatgaCCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                                                                     <  1:407041‑M1/143‑60 (MQ=255)
                                                            agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTAt                                                                                    <  2:580143‑M1/64‑1 (MQ=255)
                                                             caaaaaatcggcgcaaacaagaagaaatgaaatgacggagtcagccgagaagaatttccccgcttattcgcacctaccCTAACAGTCAGCGTATCAAGCGCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATg                                                                                   >  1:159577‑M1/79‑143 (MQ=255)
                                                             atgaCCTTGCCATAGCGTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaaaaagtccctaatctgcgatcaagtttgtcacctggagccatagaacagg                                                                                   >  2:234546‑M1/1‑82 (MQ=255)
                                                              tgaCCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                  <  2:96123‑M1/143‑63 (MQ=255)
                                                              tgaCCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGAGGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                  <  1:911423‑M1/143‑63 (MQ=255)
                                                              aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATgg                                                                                  >  2:91428‑M1/78‑143 (MQ=255)
                                                                aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCa                                                                                <  2:587104‑M1/68‑1 (MQ=255)
                                                                 ccTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtgc                                                                               >  2:132645‑M1/1‑78 (MQ=255)
                                                                 aaatcggctcaaacatgacgaaattaaatgcctgagtcagctgcgaagaagttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCaa                                                                               >  2:523025‑M1/75‑143 (MQ=255)
                                                                  cTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggcaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca                                                                              >  1:337402‑M1/1‑77 (MQ=255)
                                                                      ccATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                          >  2:181212‑M1/1‑73 (MQ=255)
                                                                       cATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTACggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttaatcatg                                                                         >  1:251906‑M1/1‑72 (MQ=255)
                                                                        ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCaa                                                                        >  1:935071‑M1/68‑143 (MQ=255)
                                                                        aTAGCTTTTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                        <  1:190634‑M1/143‑73 (MQ=255)
                                                                          caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCAAATACGGTATTTATCGTTTTTATGGCAATTGCCAATg                                                                      <  2:880417‑M1/78‑1 (MQ=255)
                                                                           aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGt                                                                     <  1:105912‑M1/79‑1 (MQ=255)
                                                                            cTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                    <  2:440485‑M1/143‑77 (MQ=255)
                                                                              tgtgGTTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                  >  2:96136‑M1/1‑65 (MQ=255)
                                                                              tgtgATTCACAGCGCCCTTCAGTGGTGTTTATTATTGAGGACTGTTTCATCCACGATGCTTCTAAggaagttgcgaacgagtccatgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                  <  2:427174‑M1/143‑79 (MQ=255)
                                                                               gtgATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaccaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca                                                                 >  1:915517‑M1/1‑64 (MQ=255)
                                                                                tgATTCTCAGCGCCCTTCAGTGGTGTTTATTAATGATGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaaggccctgatatgagatcatgttggtcatctggagccatagaacagggttcatcatgagtcatcaa                                                                <  2:367709‑M1/143‑81 (MQ=255)
                                                                                  aTTCACAGCGCCCTTCAGTGGTGTTTATTAATGAAGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtgagctggagccataaaacagggttcatcatgagacattcact                                                              >  1:598089‑M1/1‑61 (MQ=255)
                                                                                   ttCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                             >  1:892164‑M1/1‑60 (MQ=255)
                                                                                   gggagtgaagtggcggagtcagccgagaggaagttccccgcttattcgcaccttccCTAACAGGCAGCGTATCAAGCTCTTCATTAATCAGCGTCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTtg                                                             >  2:487183‑M1/57‑143 (MQ=255)
                                                                                    tCACAGCGCCCTTCAGTGGTGTTTATTGATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta                                                            >  1:206951‑M1/1‑59 (MQ=255)
                                                                                    gaaatgaaatggctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAACTGCCAATGTTCATTTtga                                                            >  2:207413‑M1/56‑143 (MQ=255)
                                                                                    gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTtga                                                            >  1:364239‑M1/56‑143 (MQ=255)
                                                                                     cacaGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgagcaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                           >  1:529418‑M1/1‑58 (MQ=255)
                                                                                     cacaGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                           <  1:743279‑M1/143‑86 (MQ=255)
                                                                                      acaGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                  >  1:813559‑M1/1‑57 (MQ=255)
                                                                                      acaGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                  <  2:813559‑M1/135‑79 (MQ=255)
                                                                                      acaGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatacaacagggttcatcatgagtcatcaccttacc                                                          >  2:536415‑M1/1‑57 (MQ=255)
                                                                                      aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTtgatg                                                          >  1:33960‑M1/54‑143 (MQ=255)
                                                                                        aGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggcgccatagaacagggttcatcatgagtcatcaactaacctt                                                        >  2:451555‑M1/1‑55 (MQ=255)
                                                                                         gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAat                                                       >  2:448775‑M1/51‑143 (MQ=255)
                                                                                           gcCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagctcatgtttgtcatctgtagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                     <  2:61214‑M1/143‑92 (MQ=255)
                                                                                              cTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                                  <  1:651361‑M1/143‑95 (MQ=255)
                                                                                               ttCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                                 >  2:642933‑M1/1‑48 (MQ=255)
                                                                                               actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTAt                                                 >  1:284337‑M1/45‑143 (MQ=255)
                                                                                                 tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCACTGTTCATTTTGATGAATATCTATTg                                               <  2:839731‑M1/101‑1 (MQ=255)
                                                                                                 tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACAACCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTg                                               >  1:746424‑M1/43‑143 (MQ=255)
                                                                                                  gagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTgg                                              >  1:580143‑M1/42‑143 (MQ=255)
                                                                                                    gtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTc                                            >  2:298701‑M1/40‑143 (MQ=255)
                                                                                                               aaTGAGGACTGTTTCATCCACGATGCTTCTAGgcaaggtgcgaccacctccctgatatcagaacatatttgtaaacagaagccatagaacagggatcatcatgagacatcaacttaccttcgccgacagtgaattcagcagta                                 >  1:18352‑M1/1‑32 (MQ=255)
                                                                                                                 tGAGGACTGTTTCATCCACGATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                               >  1:393787‑M1/1‑30 (MQ=255)
                                                                                                                  gAGGACTGTTTCATCCACCATGCTTCTAAggaaggtgcgaacaagtccctgatatgagatcatttttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                              <  1:623900‑M1/143‑115 (MQ=255)
                                                                                                                         cgcttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGt                       <  1:806106‑M1/125‑1 (MQ=255)
                                                                                                                           ttCATCCACGATGTTGCTAAggaaggtgctaacaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     <  2:194055‑M1/143‑124 (MQ=255)
                                                                                                                            ttattcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCt                    <  1:45657‑M1/128‑1 (MQ=255)
                                                                                                                            tCAGCCACGATGCGCCGAAggagggtgggaacaagaccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                    <  1:483678‑M1/143‑125 (MQ=255)
                                                                                                                               ttcgcaccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTGTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTaaa                 >  2:650350‑M1/13‑143 (MQ=255)
                                                                                                                                   caccttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCCGTTCTAACTCGa             >  1:587104‑M1/9‑143 (MQ=255)
                                                                                                                                   cGATGCTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa             <  1:863388‑M1/143‑132 (MQ=255)
                                                                                                                                    accttccCTAACATTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATTCGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGAt            >  2:812742‑M1/8‑143 (MQ=255)
                                                                                                                                      cttccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTa          <  1:475648‑M1/138‑1 (MQ=255)
                                                                                                                                        tctcgaaggaaggtggggacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcataccagaaaagagat        <  2:393099‑M1/138‑137 (MQ=255)
                                                                                                                                        tccCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTaaa        >  1:96414‑M1/4‑143 (MQ=255)
                                                                                                                                          tCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagacaagaaattt      >  2:818321‑M1/1‑5 (MQ=255)
                                                                                                                                           tctaggaaggttcgaacaagtgtctgattttagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     <  2:232597‑M1/140‑140 (MQ=255)
                                                                                                                                           cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt     >  1:296952‑M1/1‑4 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:637654‑M1/143‑141 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    >  1:277296‑M1/1‑3 (MQ=255)
                                                                                                                                            tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc    <  1:475380‑M1/143‑141 (MQ=255)
                                                                                                                                             aaggtaggtgcgaacaagtgcctgagaggagatcatgttggtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   <  1:622685‑M1/143‑142 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtcccttatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcagcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct   <  2:558527‑M1/143‑142 (MQ=255)
                                                                                                                                             aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgcattcagcagaacgcgccatcagcgcagcaacgagaatacct   >  2:296176‑M1/1‑2 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtccgaccagaacagcgattttctt  >  1:113107‑M1/1‑1 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  >  1:370974‑M1/1‑1 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  >  2:902836‑M1/1‑1 (MQ=255)
                                                                                                                                              aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt  <  1:725787‑M1/143‑143 (MQ=255)
                                                                                                                                              aCAGTCAGCGTATCAAGCTCATCATTAATCAACATCACAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTAGTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGaa  <  1:655686/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
ACCGGGTATCTGTTGAGTAGAGGGGTTAAAAAAAGAGAAATCAACGACATTGAAACCGTTGATGACCTTGCCATAGCTTGTGATTCACAGCGCCCTTCAGTGGTGTTTATTAATGAGGACTGTTTCATCCACGATGCTTCTAACAGTCAGCGTATCAAGCTCATCATTAATCAACATCCCAATACGTTATTTATCGTTTTTATGGCAATTGCCAATGTTCATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAA  >  NC_000913/2024016‑2024300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.