Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,001,645 Δ5 bp coding (220‑224/951 nt) corA → magnesium/nickel/cobalt transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4001645 4001649 5 52 [0] [0] 52 corA magnesium/nickel/cobalt transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40016440 (0.000)52 (1.000) 47/282 0.1 100% coding (219/951 nt) corA magnesium/nickel/cobalt transporter
?NC_000913 4001650 = 0 (0.000)coding (225/951 nt) corA magnesium/nickel/cobalt transporter

TTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGC  >  NC_000913/4001511‑4001788
                                                                                                                                           |                                                                                                                                          
atggagtggtgttgtcgaccgggacgccgacgagcgactgcgcgtacaatctgaacttggccagggcctggcaacccgcccggagctggaaggcatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTcc                                                                                                                                         <  1:423330‑M2/4‑1 (MQ=255)
 tggattgatcttgtcgaaccggacgacgacgagcggctgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCct                                                                                                                                        <  1:894151‑M2/5‑1 (MQ=255)
    attgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttct                                                                                                                                     >  1:463665‑M2/136‑143 (MQ=255)
     ttgatcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgaccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttctt                                                                                                                                    >  1:548019‑M2/135‑143 (MQ=255)
      tgagcgtgtcgacccggacggcgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactgtaagacatcgaagcatcggcacgtttctgtgaagacgacgacggcctgcatCTCcttcttc                                                                                                                                   <  2:238671‑M2/10‑1 (MQ=255)
         tcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcttc                                                                                                                                <  2:607505‑M2/13‑1 (MQ=255)
         tcttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcctc                                                                                                                                >  1:471723‑M2/131‑143 (MQ=255)
          cttgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCcttcttcttct                                                                                                                               >  1:487556‑M2/130‑143 (MQ=255)
            tgtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCttt                                                                                                                             <  1:160588‑M2/16‑1 (MQ=255)
             gtcgaaccggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgcagacgacgacggcctgcatCTCCTTCTTCTTCTTTg                                                                                                                            >  1:632532‑M2/127‑143 (MQ=255)
               cgagccggacgacgacgagcgactgcgcgtacaatctgaagttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGaa                                                                                                                          <  2:441359‑M2/19‑1 (MQ=255)
                  accggacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaacgggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGAt                                                                                                                       <  1:235128‑M2/22‑1 (MQ=255)
                   ccggacgacgacgagcgactgcgcgtacaatctgaacttggccagcgcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgtagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATg                                                                                                                      <  1:40242‑M2/23‑1 (MQ=255)
                      gacgacgacgagcgactgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcattgggacgtctatctgaagacgacgacggcctgcaaCCCCTGCTTCTTCTTTGAAGATGCgg                                                                                                                   >  2:717249‑M2/118‑143 (MQ=255)
                         gacgacgcgcgtctgcccgtacaatctgaacttggccagagcctggcatcccgcccggtactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAg                                                                                                                <  2:247164‑M2/29‑1 (MQ=255)
                          acaacgatcgactgccaagacaatctgaacttggccagagcctggcaacccgcccgtaactggaagacatcgatgcatcgccacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGa                                                                                                               <  2:133185‑M2/30‑1 (MQ=255)
                            gacgagcgactgcgcgtacaatctgagcttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATc                                                                                                             <  1:699847‑M2/32‑1 (MQ=255)
                              cgagcgcctgcgcgtacaatctgaactttgccagagcctggcaacccgctcggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCAc                                                                                                           <  2:765455‑M2/34‑1 (MQ=255)
                                    agtgggggtacgatctgagctgggcccgagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGt                                                                                                     <  2:300129‑M2/40‑1 (MQ=255)
                                    actgcgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagaccacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGt                                                                                                     <  1:497735‑M2/40‑1 (MQ=255)
                                        cgcgtacaatctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTACCt                                                                                                 >  1:376182‑M2/100‑143 (MQ=255)
                                             acaatctgcacctgcctatagcctgggaacccgccctgaactggaagacatagaagcttcggctcgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACt                                                                                            <  2:333897‑M2/49‑1 (MQ=255)
                                                ttctgagcttggcgagggcctggcatcccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACtgtg                                                                                         <  2:778516‑M2/52‑1 (MQ=255)
                                                atctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACtgtg                                                                                         >  1:831616‑M2/92‑143 (MQ=255)
                                                atctgaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGCATCTCCACtgtg                                                                                         >  2:690515‑M2/92‑143 (MQ=255)
                                                    gaacttggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCAt                                                                                     >  1:242470‑M2/88‑143 (MQ=255)
                                                         tggccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatATCCTTCTTCTTCTTTAAAGATGCGGAAGATCACGACGGAAACTCCACAGTGAAATTTAcc                                                                                >  1:766388‑M2/83‑143 (MQ=255)
                                                           gccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCGCTGTGGCATTTACCAt                                                                              >  2:659199‑M2/81‑143 (MQ=255)
                                                           gccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGAGCACGCCCGTAACGCCACCGTGGCATTTACCAt                                                                              >  2:661672‑M2/81‑143 (MQ=255)
                                                            ccagggcctggcaccccgcccggaacgggaggacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATc                                                                             <  2:587884‑M2/64‑1 (MQ=255)
                                                            ccagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCatg                                                                             >  1:843296‑M2/80‑142 (MQ=255)
                                                             cagagcctgtctactctccctgaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATcc                                                                            <  1:61353‑M2/65‑1 (MQ=255)
                                                             cagagcctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGATGATCACGCCGGTATCTCCTCTGTGTCATTTCCCAtca                                                                            >  1:101703‑M2/79‑142 (MQ=255)
                                                                  cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGAt                                                                       <  1:191772‑M2/70‑1 (MQ=255)
                                                                  cctggcaacccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGAGCACGCCGGTAACTCCGCTGTGGCCCCTCCCatccgcgtt                                                                       >  1:252405‑M2/74‑139 (MQ=255)
                                                                           ccgcccggaactggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGCCTg                                                              >  2:942220‑M2/65‑143 (MQ=255)
                                                                                     ctggaagacatcgaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCTTGATGGTCGTCTGTTTACTCTgc                                                    <  2:662608‑M2/89‑1 (MQ=255)
                                                                                     ctggaagacatagaagtctcggcacgtttctttgaagacgacgactgcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACTATCCGTGATGGTCGTCTGTTTACTCTgc                                                    <  2:95372‑M2/89‑1 (MQ=255)
                                                                                                 gaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAAc                                        <  2:140046‑M2/101‑1 (MQ=255)
                                                                                                 gaagcatcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAAc                                        <  1:302003‑M2/101‑1 (MQ=255)
                                                                                                     catcggcacgtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGCGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGcc                                    >  1:274788‑M2/39‑143 (MQ=255)
                                                                                                              gtttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTCCTCTGCGTGAGCGTGAACTACCCgcttttag                           >  1:881526‑M2/30‑141 (MQ=255)
                                                                                                               tttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGt                          <  1:663484‑M2/115‑1 (MQ=255)
                                                                                                                ttctttgaagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGAAGATAACTGCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTCTACTCTGCGTGAGCGTGCGCTGCacgcttttagca                         >  2:157971‑M2/28‑139 (MQ=255)
                                                                                                                     ttaagacaatgtcggcctgcatCTCCGTATTCTTCTGTGAAGAGGCGGAAGAGCACGCCGGTAACGCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTTCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTAt                    <  1:100747‑M2/121‑1 (MQ=255)
                                                                                                                       aagacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTACACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCg                  <  2:487556‑M2/123‑1 (MQ=255)
                                                                                                                         gacgacgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTa                >  1:803708‑M2/19‑143 (MQ=255)
                                                                                                                          gcggtggcggcatgcatCTCTTTCTCCTTCTTGGGAGATGCGGAAGATCACGCCGGTAACTCCACTGTCGCAGTTACCATCCGTCACGGTCGTCCGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTAt               <  2:361591‑M2/126‑1 (MQ=255)
                                                                                                                              cgacggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTCCGTCTGTATCGTATGCGt           >  1:350812‑M2/14‑143 (MQ=255)
                                                                                                                                  ggcctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGccc       <  2:480574‑M2/134‑1 (MQ=255)
                                                                                                                                    cctgcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGt     >  1:511310‑M2/8‑143 (MQ=255)
                                                                                                                                       gcatCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTCACCTGCCCGCTTCTCGTCTGTATCGTCTGCTTgcccgacgc  >  1:289749‑M2/5‑139 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTAGC  >  NC_000913/4001511‑4001788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.