Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,313,540	Δ2 bp :: IS186 (+) +6 bp	coding (53‑58/2673 nt)	rcsD →	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2313540 =	0 (0.000)	79 (1.080)	65/276	0.1	100%	coding (53/2673 nt)	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
	?	NC_000913	= 2515617	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region
*	?	NC_000913	= 2313545	0 (0.000)	78 (1.050)	64/280	0.1	100%	coding (58/2673 nt)	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
	?	NC_000913	2514275 =	NA (NA)					noncoding (3/1345 nt)	IS186	repeat region

AGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACT  >  NC_000913/2515478‑2515756                                                                                                                                             |                                                                                                                                            aGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATaa                                                                                                                                          >  2:575223/1‑143 (MQ=31)        cggTGGCCATGCGTGGGACAGTATCCCTGACGGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCg                                                                                                                                   <  1:538620/142‑1 (MQ=25)        aGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCg                                                                                                                                   <  1:809965/143‑1 (MQ=35)        aGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATACCCCg                                                                                                                                   <  1:1154659/143‑1 (MQ=21)        aGGTGGCCATGCGTGGGACAGCATTCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCg                                                                                                                                   <  1:849377/143‑1 (MQ=255)          gttgcgaTTCGGGGGACAGTGTCCCTTTCATCCTCAATGACGAAATGTAAGGACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGt                                                                                                                                 <  2:470318/137‑1 (MQ=11)          gTGGCCACTCGTGGGACAGCATCCCTCGCCGCCTACCACTCGTGTTGCATGGACGCGAGGCATCGTCTGAAGGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGt                                                                                                                                 <  2:470103/143‑1 (MQ=11)           tGGCCATTCGGGGGACAGTATCCCTGACAGCCTACAACACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGtt                                                                                                                                <  1:1306614/143‑1 (MQ=255)             gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGtttt                                                                                                                              >  1:1296905/1‑143 (MQ=38)               cactCGTGGGACAGTATCCGTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGtttttt                                                                                                                            <  1:1157012/140‑1 (MQ=255)                  tCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCGTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTAc                                                                                                                         >  2:816816/1‑143 (MQ=255)                     tGGGACAGCATCCCTGACAGCCTACAAAACGCAATGGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑ATCTAGACAATATGTGGATAATTCCCCGGTTTTTTTACGcc                                                                                                                      <  2:420643/143‑1 (MQ=14)                      gggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCt                                                                                                                     <  1:31591/143‑1 (MQ=255)                       ggACAGTATCCCTGACAGCCTATAAAACAGAAGCGACGAACGCGAGTCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGTTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTg                                                                                                                    <  2:45279/143‑1 (MQ=17)                        gACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTCAGTTAGCGCTTATG‑GGATATTTCCCCGGTTTTTTTACGCgtgt                                                                                                                   >  2:849968/1‑143 (MQ=255)                         aCAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGtt                                                                                                                  >  2:1284321/1‑143 (MQ=255)                          cAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGttc                                                                                                                 >  1:889257/1‑142 (MQ=255)                           aGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTACGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTaa                                                                                                                >  1:21665/1‑143 (MQ=255)                             tATCCCTGACAGCCTACAAAACGCAATTGAAATACCTCTAGCGTCTGCGTAACGAGGCACCGAGGCGTGGCGGTCTCCAGACTGTTCAACCCTTCAGTGAGCGCTTATG‑GGATAATTCCCCGGTCGTTTTACGCGTGttggtt                                                                                                              >  2:824497/1‑139 (MQ=9)                              aTCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCa                                                                                                             <  2:235723/143‑1 (MQ=255)                               tCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACAGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATGCCCCGGTTTTTTTCAGCCCGTTAATTAg                                                                                                            >  2:674955/1‑143 (MQ=14)                                cccTGACAGCCTACAAAGCGCAAGTGAAGGACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTTAGTTAGCGCTTATG‑GGATCATTCCCCGGTTTTTTTACGCCTGTTAATCAGc                                                                                                           <  2:716210/143‑1 (MQ=17)                                 ccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATCCTTCAGATGGGTCAACCCTTAAGCTAGCGCCTATG‑GGATACTTCCCCGGTACTTTTACGCCTGTCAAACGGCt                                                                                                          >  2:457832/1‑143 (MQ=14)                                 ccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCAGCGGCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt                                                                                                          >  1:935650/1‑143 (MQ=255)                                     gcAGCCGACGCAACTCAAGTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGGCGCATTCTTCAGATGGTTCAGCCCTTAAGTGAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATg                                                                                                      <  2:1169528/142‑1 (MQ=18)                                      cAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg                                                                                                     <  1:97154/143‑1 (MQ=255)                                       aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATC‑GGATAATTCCCCGGTTTTTTTTCGTGCGATTATCAGCTAATgga                                                                                                    >  2:724291/1‑142 (MQ=14)                                         ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATGCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTg                                                                                                  >  1:395583/1‑143 (MQ=255)                                          cTACAGAACGCAATCGGAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTGCAACCCTTAGGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc                                                                                                 <  2:524235/143‑1 (MQ=18)                                          cTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc                                                                                                 >  1:669383/1‑143 (MQ=255)                                           tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCCTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑AGATAATTCCCCGGCTCTTTTACGTCTGTTGATCAGCTAATGGCTGCg                                                                                                >  2:433462/1‑143 (MQ=17)                                           tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTAATCCTTTTAATCAGCTAATGGATGCg                                                                                                >  2:806978/1‑143 (MQ=255)                                            aCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTATTCGGCTAATGGCTGCgg                                                                                               >  2:56670/1‑143 (MQ=255)                                                aaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGGGGCGTCGCATTCTTCAGCTGGTTCAACCCTTAAGTTCGCGCTTCTG‑GGCTTGTTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGcaa                                                                                           >  1:378426/1‑141 (MQ=18)                                                aaCGCAATTCAAGAACGCGACGCCTCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGa                                                                                           <  1:758303/143‑1 (MQ=255)                                                 aCGCAATTGAAGAACGCGTGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGAc                                                                                          <  2:943749/143‑1 (MQ=255)                                                   gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACTCCTCTTAATCCGCTCATGGCTTCGGTCAAccc                                                                                        >  2:590533/1‑142 (MQ=17)                                                          aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCCACCCTTACGTTACCGCTTATG‑GGATAATTCCCCGGCTCTTTTCCGCCTGTCCCTCCCCCAATCGCTGCGGGCCTCCCCTCAAAt                                                                                 >  2:9480/1‑143 (MQ=14)                                                          aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAACTAATGACTGCGGGCGACCAATCAAAt                                                                                 >  1:549876/1‑143 (MQ=255)                                                          aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCGGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAAt                                                                                 >  1:338647/1‑143 (MQ=255)                                                             aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCCAATAcc                                                                              >  1:735734/1‑143 (MQ=255)                                                             aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAcc                                                                              >  1:736072/1‑143 (MQ=255)                                                              aCGCGAGGCATCGTCTCAACGAGGCACCGAGGCGTCGCATGCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAccc                                                                             <  1:810156/143‑1 (MQ=255)                                                                gcgAGGCATCGTCTTAACGATGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                                                           <  2:836066/143‑1 (MQ=255)                                                                gcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                                                           >  2:765550/1‑143 (MQ=255)                                                                 cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTg                                                                          <  1:385722/143‑1 (MQ=255)                                                                  gAGGCATCGTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGc                                                                         <  1:490265/143‑1 (MQ=255)                                                                        tCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGAGATTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAGCCTTGCAGatat                                                                   >  1:613003/1‑143 (MQ=255)                                                                              tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCAcc                                                             <  1:673617/143‑1 (MQ=255)                                                                                  gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTCGCGCTAATG‑GGAGAATTCCCCGGCTTTTTTACGCCTGTTAATTCGATAATGCCCGCAGGCTACAAATAAAATACCCTAGGAAATAGTGCAaccgca                                                         >  2:971227/1‑140 (MQ=12)                                                                                   aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAg                                                        >  1:1005573/1‑143 (MQ=255)                                                                                   aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATAACCCGGTTTTTTTACGCCTGTTAATCAGCTACTTACTGCGGGCCACCCATCAAATACCCCTGAATATCTTACACCCCGaa                                                        >  2:561698/1‑142 (MQ=21)                                                                                   aGGCACCGAGGCGTCGCATTCTGCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAg                                                        <  1:1240578/143‑1 (MQ=255)                                                                                     gCACCGCGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTTTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCt                                                      <  1:336926/143‑1 (MQ=255)                                                                                     gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTCATGGCTGCGGGCGACCAATCAAATACCCTTGCACATATTGCACCCCGACCt                                                      >  2:703832/1‑143 (MQ=255)                                                                                         cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                                                  >  1:1008407/1‑143 (MQ=255)                                                                                          gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGc                                                 >  1:926890/1‑143 (MQ=255)                                                                                              cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAGTGCCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa                                             >  2:1182037/1‑143 (MQ=255)                                                                                              cGTCGCATTCTTCAGATGGTTCAACCACTACGTTACCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATa                                             <  1:1284321/143‑1 (MQ=255)                                                                                               gTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAg                                            >  1:177566/1‑143 (MQ=255)                                                                                                  gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgcgc                                         <  1:765550/143‑1 (MQ=255)                                                                                                   cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATGATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGcc                                        <  2:1049047/143‑1 (MQ=255)                                                                                                        ttcAGATGGTTCCACCCCTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATCCCATTGCACTTATTGCACCCCGAGCTTATGCAATAGCGCctgctg                                   <  1:704911/143‑1 (MQ=39)                                                                                                         tcAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctgc                                  >  1:135680/1‑143 (MQ=255)                                                                                                          cAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctggtgct                                 >  2:690352/1‑143 (MQ=255)                                                                                                           aGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCCGCTCATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCGATGCCGGctgctgctg                                >  1:56022/1‑143 (MQ=38)                                                                                                            gATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGt                               >  1:97395/1‑143 (MQ=255)                                                                                                            gATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGAGACCAATGATATACCCGTGCAGATATTGCACCCCGAGCTTATGAAATAGCACctgctgcagc                               >  2:474675/1‑140 (MQ=38)                                                                                                              tGGTTCTTCCCTTAAGTTAGCGCTTATT‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTg                             <  2:172530/143‑1 (MQ=255)                                                                                                                 ttCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGt                          >  1:1298886/1‑143 (MQ=255)                                                                                                                   cAACCCTTACGTGAGCGCGTATG‑GGAGAATTCCCCGGTGTTTTTACCCCTGTTAATCAGCTAATGGCTGCTGGCGACCACTCAAATACCCTTGCACATATTGCACCCCTAGCTTATGCAATAGCGCCTGCTGCTGTTGCGtct                        <  2:301672/143‑1 (MQ=255)                                                                                                                    aaCCCGTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGtctc                       <  1:136042/143‑1 (MQ=255)                                                                                                                     ccgctgcaGTTAGCTCTTATG‑CTGTAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCACATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCg                      <  2:881352/136‑1 (MQ=255)                                                                                                                     agccTTAAGTTCGCGCTGATG‑GGATAATTCCCCGGGTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAAGACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCg                      <  2:718735/141‑1 (MQ=255)                                                                                                                      cccTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGa                     <  2:1296905/143‑1 (MQ=255)                                                                                                                      cccTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGa                     <  2:1220809/143‑1 (MQ=255)                                                                                                                        cTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGGTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCCACCAATCCAATACCCTTGCAGTTATTGCACCCCGATATTATGCAATTGCTCCTGCTGCAGCTGCGTCACTACa                   >  2:176113/1‑143 (MQ=255)                                                                                                                          cacttcaGCGCTGCTG‑CGATACTCGCCCGGTTTCTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCTACTAATCAACTACCCTTGCTGATCTTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACaaa                 <  1:818120/137‑1 (MQ=255)                                                                                                                             gTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCATGTTAATCAGCTAATGGCTGCGGTCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCATTAGCGCCTGCTGCTGTTGGTTCTCGCCAAACTc              >  2:804753/1‑143 (MQ=255)                                                                                                                              gtAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTcc             <  2:378426/142‑1 (MQ=255)                                                                                                                               tggcgcTGAGG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCcg            <  2:338647/141‑1 (MQ=255)                                                                                                                                aGCGCTTATG‑GGAGAGTTCCCCGGTGTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCCAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCcgc           <  2:131106/143‑1 (MQ=255)                                                                                                                                aGCGCTTATA‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCcgc           <  1:289857/143‑1 (MQ=255)                                                                                                                                 gcgcTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCATATGCAATCGGGCCTGCTGCTGTTACGTCTCGAAAAACTCagcg          >  1:46127/1‑143 (MQ=255)                                                                                                                                  cgcTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGa         <  1:816816/143‑1 (MQ=255)                                                                                                                                   gcTTATG‑GGATAATTCCGCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGAc        <  2:981320/143‑1 (MQ=255)                                                                                                                                    cTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTACTCCGCTAATGGCTGCGCGCAACCAACCAAATACCCTCGCAGATATTCCACCCCGAGCTTATCCAATCGCGCCCGCTGGTGTTGCGGCCCGACCAACCCCCCCAcc       >  2:574807/1‑143 (MQ=255)                                                                                                                                         g‑ggATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACt  <  1:1053012/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            AGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG‑GGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACT  >  NC_000913/2515478‑2515756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.