Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)56 (0.920) 46/284 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)74 (1.220) 56/284 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 138 total aligned reads displayed.

GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173
                                                                                                                                              |                                                                                                                                             
gATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCCCAATTGTTCTTTAttt                                                                                                                                               <  2:728895/143‑1 (MQ=255)
gATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAttt                                                                                                                                               >  1:423504/1‑143 (MQ=255)
 cgctgatgtccggcggtgcttttgctgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctt                                                                                                                                              >  2:925973‑M1/142‑143 (MQ=255)
 cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctt                                                                                                                                              <  1:644581‑M1/2‑1 (MQ=255)
   gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgt                                                                                                                                            <  1:1062070/143‑1 (MQ=255)
   gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgt                                                                                                                                            <  1:865642/143‑1 (MQ=255)
       ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAGATTGTTCTTTATTTTGTgccg                                                                                                                                        >  2:841995/1‑143 (MQ=255)
       ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                        >  2:67832/1‑143 (MQ=255)
       ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccc                                                                                                                                        >  1:756876/1‑142 (MQ=255)
       ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTGTATTTTGTgccg                                                                                                                                        >  2:613237/1‑143 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGACTTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                       >  2:872522‑M2/1‑142 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                       >  2:872507‑M2/1‑142 (MQ=255)
        tCAGAATTTTAAGTGCTTCGCTCATCGTAGTAATCTCAAACTTGTATTGGGGTGTCTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTTCACTAGCCAGGCATCAAAGGGATTCACAGCGGTTCTTCATTTTGTgctgt                                                                                                                                       >  2:391531/1‑140 (MQ=255)
         cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                      <  2:374876‑M2/143‑3 (MQ=255)
           cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                    <  2:12321‑M1/12‑1 (MQ=255)
             aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                  >  1:374876‑M2/1‑137 (MQ=255)
             aTTTGTAGTGCTTGGCTCAGTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                  >  2:617798‑M2/1‑137 (MQ=255)
              ttttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGTGCCGggtaatg                                                                                                                                 <  1:846778‑M2/143‑8 (MQ=255)
              cggtgcgtttgccgtgacgcaccaccccctcagtagctgcacaggagggacagctgatagaaacagcagccactggagcacctccaaaacctcatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataa                                                                                                                                 >  2:233984‑M1/129‑143 (MQ=255)
               ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgccagcatcaccTTGTGCCgccaatcag                                                                                                                                <  1:610458‑M1/16‑4 (MQ=255)
                ttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                               <  2:967305‑M2/143‑10 (MQ=255)
                gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                               <  1:988436‑M1/17‑1 (MQ=255)
                  aaGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactc                                                                                                                             >  1:838677‑M2/1‑132 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaagcagaagccactggagcacctcaaaaacaccatcatgcactaaatcagtaggttggcagcatcagcTTGTGCCgccaataaatagct                                                                                                                           <  1:59197‑M1/21‑4 (MQ=255)
                    ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcacaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCt                                                                                                                           <  1:219889‑M1/21‑1 (MQ=255)
                      ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                         >  1:701038‑M1/121‑143 (MQ=255)
                        ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGTGCCGggtaatgacgccaactt                                                                                                                       <  1:871484‑M2/143‑18 (MQ=255)
                         tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                      >  2:916484‑M2/1‑125 (MQ=255)
                          cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                     >  2:858811‑M2/1‑124 (MQ=255)
                            ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                   >  1:511927‑M1/115‑143 (MQ=255)
                             tCATTGTAGTAATCACAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                  >  2:589133‑M2/1‑121 (MQ=255)
                              acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                                 >  1:526715‑M1/113‑143 (MQ=255)
                                gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAGAtt                                                                                                               <  1:283604‑M1/33‑1 (MQ=255)
                                 caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                              <  1:777566‑M1/34‑1 (MQ=255)
                                   ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgggagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                            >  1:1098967‑M1/108‑143 (MQ=255)
                                       ccagtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGACAGa                                                                                                        <  2:444269‑M1/40‑1 (MQ=255)
                                         cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaa                                                                                                      >  1:621819‑M1/102‑143 (MQ=255)
                                             aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                  <  1:732726‑M2/143‑39 (MQ=255)
                                               tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCACCCATAGATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                <  1:455646‑M1/48‑1 (MQ=255)
                                                   tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                            <  1:962590‑M1/52‑1 (MQ=255)
                                                   tgaacaggagggacagctgatagaaacagaagccactcgagcaccccaaaaacaccatcatacactaaatcagtaagctggcaccatcaccTTGTGCCGCCAATACATATCCTGCCCTAAACTCAGCCACaaaagaccccccc                                                                                            <  2:845786‑M1/52‑7 (MQ=255)
                                                      ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                         <  2:114400‑M2/143‑48 (MQ=255)
                                                       caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAGAAGAcgcggcgtgta                                                                                        <  1:815433‑M1/56‑6 (MQ=255)
                                                         ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTATTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                      <  1:978383‑M1/58‑1 (MQ=255)
                                                          gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGTCAGAAAAGACGCGGCATATAGcc                                                                                     <  1:977894‑M1/59‑1 (MQ=255)
                                                          gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                     >  1:1025547‑M1/85‑143 (MQ=255)
                                                           agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATCGccc                                                                                    <  1:431845‑M1/60‑1 (MQ=255)
                                                                  gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac                                                                             <  2:688580‑M1/67‑1 (MQ=255)
                                                                    tgAGGTAATAATACAGATCTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                           >  2:5611‑M2/1‑82 (MQ=255)
                                                                     gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAcc                                                                          >  1:888208‑M1/74‑143 (MQ=255)
                                                                       tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAGATATCTTTGCACAAAACTAACCAGAAAAGACGCGGCATATAGCCGCATTTACACCga                                                                        <  1:746421‑M1/72‑1 (MQ=255)
                                                                        gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca                                                                       <  2:162414‑M2/143‑66 (MQ=255)
                                                                          aataatAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGCATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgcctccaacttcttgacagtgttttatgttctgattctgcccgctgccgttctcgtgcagc                                                                     <  1:840121‑M2/143‑68 (MQ=255)
                                                                          aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga                                                                     <  2:208197‑M1/75‑1 (MQ=255)
                                                                           aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatgat                                                                    <  1:481840‑M1/76‑1 (MQ=255)
                                                                           aacagaagccactggagcacctcaaaaacaccatcatacaccaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCACAAAATTAGCCAAACAAGACGCGGCATATAGCCCTATTTACACcgatgac                                                                    <  2:980992‑M1/76‑2 (MQ=255)
                                                                            acagaagccactggagcacctcaaaaacaccatcatacactaactcagtaagttggcagcatcaccTTGTGCCGCCAATCAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                   <  2:747330‑M1/77‑1 (MQ=255)
                                                                             aataGCGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAACATTGTTCGTTATTTTGTGCCGggtcatgactccaacttattgttcgtgtgttatgagcagatgatgcccgctgactttgtcatgcggccac                                                                  <  2:219906‑M2/143‑71 (MQ=255)
                                                                              atgtggccttaAATGCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTAGGGCGGcgttggggctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                                 >  2:661616‑M2/6‑72 (MQ=255)
                                                                               taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                >  1:877608‑M2/1‑71 (MQ=255)
                                                                                 gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                              <  2:98536‑M2/143‑75 (MQ=255)
                                                                                 agccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGTATATAGCCCTATTTACACCGATGATTTCgca                                                              >  1:850562‑M1/62‑143 (MQ=255)
                                                                                 acccactggagcacctcaaaaacaccatcatacactaagtcagtaagtgggcagcatcaccTTGTGCCGCCAACAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                              >  1:951306‑M1/62‑143 (MQ=255)
                                                                                  gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                             >  2:737443‑M1/61‑143 (MQ=255)
                                                                                    ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                           <  1:845358‑M2/143‑78 (MQ=255)
                                                                                      ccaaattCACTTTTGCAATAGCCAGGAATTAAAGGAACTCAAACTTGTTCTTTATTTTGTGCCGggtaacgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                         >  1:990569‑M2/3‑64 (MQ=255)
                                                                                         gagcacctcaaacacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                      >  1:607570‑M1/54‑143 (MQ=255)
                                                                                          agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAg                                                     >  2:193741‑M1/53‑143 (MQ=255)
                                                                                           ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgcctttgtcatgcagctccgccgattttaagac                                                    <  1:134611‑M2/143‑85 (MQ=255)
                                                                                            cgcgtcgaacacaccatcagccacgaaatcggtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCGTAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGt                                                   >  2:1093278‑M1/51‑143 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCAGAGCACGTGAGGCTaa                                                <  2:3943‑M1/96‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCACTATTGACACCGATGATTTCGCAGCACGTGAGGTtac                                                <  2:479153‑M1/96‑2 (MQ=255)
                                                                                                ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaataactccaacttattgatagtgtttgatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagcacgaca                                               <  2:647380‑M2/143‑90 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                               <  1:925726‑M1/97‑1 (MQ=255)
                                                                                                  aaaaacaccctcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAATAATAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAc                                             >  2:529748‑M1/45‑143 (MQ=255)
                                                                                                  aaaaacaccatcatacactaaaacagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCGTcacgtcaggccacacc                                             <  1:784824‑M1/99‑8 (MQ=255)
                                                                                                    gCAATAGCCAGGAATGTAAGTAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                           >  1:145490‑M2/1‑50 (MQ=255)
                                                                                                     aacaccatcatacactaaatcagtaagttggcaggatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGTCGCGGGATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                          >  2:328496‑M1/42‑143 (MQ=255)
                                                                                                      acaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                         >  2:962590‑M1/41‑143 (MQ=255)
                                                                                                          catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                     <  1:201986‑M1/107‑1 (MQ=255)
                                                                                                          catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACATCAGGTTAAAACTGCCTGAt                                     <  1:305895‑M1/107‑1 (MQ=255)
                                                                                                            cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgacagcgacttccgtc                                   <  1:276540‑M2/143‑102 (MQ=255)
                                                                                                             aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactttttcatgcagctccaccgattttgagaacgacagagccttccgccc                                  <  1:910549‑M2/143‑103 (MQ=255)
                                                                                                             aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgacaccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                  <  1:76959‑M2/143‑103 (MQ=255)
                                                                                                                acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATACCCCTATTTACACCGATGCATTCGCAGCACGTGAGGTTAAAACTtcctgatgcctgt                               <  2:298793‑M1/113‑7 (MQ=255)
                                                                                                                  actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCCATGATTTCGCAGCACGCGAGGTTAAAACTTCCTGATTCATGTca                             <  1:778988‑M1/115‑1 (MQ=255)
                                                                                                                    tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcctgcgtctccaccgattttgtgacggacagcgacttccgtcccagccgc                           <  1:582051‑M2/143‑110 (MQ=255)
                                                                                                                       ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatcactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgcgaccgacagcgccttccgacccagccctgca                        <  2:701945‑M2/143‑113 (MQ=255)
                                                                                                                              aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                 <  1:924591‑M2/143‑120 (MQ=255)
                                                                                                                                ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag               <  1:272176‑M1/129‑1 (MQ=255)
                                                                                                                                      tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgtagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga         >  1:67832‑M2/1‑16 (MQ=255)
                                                                                                                                       cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagat        <  2:894992‑M2/143‑129 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt       <  1:189321‑M2/143‑130 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt       <  1:78479‑M2/143‑130 (MQ=255)
                                                                                                                                           cttttgTGCCGggtaatgactccaactgattgatggtgttttgtgttcagatgatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgggccaggtgctgcctcagattcag    >  2:919349‑M2/2‑11 (MQ=255)
                                                                                                                                           aTTTTTTGCCGggcaatcactccaacttattgatagtgttttatgttcagatagtgcccgatgactttgttatgtagttccaccgattttgagaactacagcgactgccgtcccagccgtgccaggtgctgcctcagattcag    >  1:76806‑M2/1‑11 (MQ=255)
                                                                                                                                            ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcatataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacctccgtccccgccgtgccaggtgctgcatcagagtcagg   <  1:223247‑M2/143‑134 (MQ=255)
                                                                                                                                            ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctccgattcagg   <  1:370045‑M2/143‑134 (MQ=255)
                                                                                                                                            ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg   <  1:179863‑M2/143‑134 (MQ=255)
                                                                                                                                             cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATGTTATGGGGAGATTATCGTAGGCt  <  2:354871‑M1/142‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.