Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)56 (0.920) 46/284 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)74 (1.220) 56/284 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 135 total aligned reads displayed.

TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292897‑1293181
                                                                                                                                              |                                                                                                                                              
ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAGATTGTTCTTTATTTTGTgccg                                                                                                                                                >  2:841995/1‑143 (MQ=255)
ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                                >  2:67832/1‑143 (MQ=255)
 tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                               >  2:872507‑M2/1‑142 (MQ=255)
  cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                              <  2:374876‑M2/143‑3 (MQ=255)
      aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                          >  1:374876‑M2/1‑137 (MQ=255)
      aTTTGTAGTGCTTGGCTCAGTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                          >  2:617798‑M2/1‑137 (MQ=255)
        ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgccagcatcaccTTGTGCCgccaatcag                                                                                                                                        <  1:610458‑M1/16‑4 (MQ=255)
         ttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                                       <  2:967305‑M2/143‑10 (MQ=255)
         gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                                       <  1:988436‑M1/17‑1 (MQ=255)
             ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcacaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCt                                                                                                                                   <  1:219889‑M1/21‑1 (MQ=255)
             ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcctcaccTTGTGCCGCCAATCAATATCt                                                                                                                                   <  1:323211‑M1/21‑1 (MQ=255)
               gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgaatccaac                                                                                                                                 <  2:605880‑M2/143‑16 (MQ=255)
                 ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGTGCCGggtaatgacgccaactt                                                                                                                               <  1:871484‑M2/143‑18 (MQ=255)
                 gccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAAGATCGTTTc                                                                                                                               <  1:123795‑M1/25‑1 (MQ=255)
                  tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                              >  2:916484‑M2/1‑125 (MQ=255)
                   cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                             >  2:858811‑M2/1‑124 (MQ=255)
                      tCATTGTAGTAATCACAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                          >  2:589133‑M2/1‑121 (MQ=255)
                       acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                                         >  1:526715‑M1/113‑143 (MQ=255)
                          caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                      <  1:777566‑M1/34‑1 (MQ=255)
                            ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgggagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                    >  1:1098967‑M1/108‑143 (MQ=255)
                                cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCACTAAATATCTTTTCATAAAATTAGCCAGa                                                                                                                <  1:273450‑M1/40‑1 (MQ=255)
                                ccagtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGACAGa                                                                                                                <  2:444269‑M1/40‑1 (MQ=255)
                                 aTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTGTGTGCCGggtaatgactccacgttattgatagtggtgtat                                                                                                               <  1:207654‑M2/143‑34 (MQ=255)
                                      aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                          <  1:732726‑M2/143‑39 (MQ=255)
                                         agctgaacaggagagacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgcg                                                                                                       >  1:856918‑M1/95‑143 (MQ=255)
                                            tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                                    <  1:962590‑M1/52‑1 (MQ=255)
                                               ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                 <  2:114400‑M2/143‑48 (MQ=255)
                                                caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAGAAGAcgcggcgtgta                                                                                                <  1:815433‑M1/56‑6 (MQ=255)
                                                  gggTGGTTTGTTGAGGTAATACTAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTGATTTTGTGCCGggtaatgactccaacttattgttagtgttttatgttcagataatgcccga                                                                                              >  1:986439‑M2/1‑93 (MQ=255)
                                                   gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGTCAGAAAAGACGCGGCATATAGcc                                                                                             <  1:977894‑M1/59‑1 (MQ=255)
                                                   gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                             >  1:1025547‑M1/85‑143 (MQ=255)
                                                    agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATCGccc                                                                                            <  1:431845‑M1/60‑1 (MQ=255)
                                                        acagcggagaggaacagaagccactggagcacctcaaaagcaccatcatacactaaatcagtaagttggcagcatcaccTTGCGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                        >  1:410732‑M1/80‑143 (MQ=255)
                                                             tgAGGTAATAATACAGATCTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                                   >  2:5611‑M2/1‑82 (MQ=255)
                                                              gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAcc                                                                                  >  1:888208‑M1/74‑143 (MQ=255)
                                                                tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAGATATCTTTGCACAAAACTAACCAGAAAAGACGCGGCATATAGCCGCATTTACACCga                                                                                <  1:746421‑M1/72‑1 (MQ=255)
                                                                ggTAATAATAGAGCCTTAAATGCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                                >  1:471713‑M2/1‑79 (MQ=255)
                                                                 gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca                                                                               <  2:162414‑M2/143‑66 (MQ=255)
                                                                   aataatAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGCATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgcctccaacttcttgacagtgttttatgttctgattctgcccgctgccgttctcgtgcagc                                                                             <  1:840121‑M2/143‑68 (MQ=255)
                                                                   aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga                                                                             <  2:208197‑M1/75‑1 (MQ=255)
                                                                    aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatgat                                                                            <  1:481840‑M1/76‑1 (MQ=255)
                                                                    aacagaagccactggagcacctcaaaaacaccatcatacaccaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCACAAAATTAGCCAAACAAGACGCGGCATATAGCCCTATTTACACcgatgac                                                                            <  2:980992‑M1/76‑2 (MQ=255)
                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaactcagtaagttggcagcatcaccTTGTGCCGCCAATCAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                           <  2:747330‑M1/77‑1 (MQ=255)
                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                           <  1:638610‑M1/77‑1 (MQ=255)
                                                                      aataGCGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAACATTGTTCGTTATTTTGTGCCGggtcatgactccaacttattgttcgtgtgttatgagcagatgatgcccgctgactttgtcatgcggccac                                                                          <  2:219906‑M2/143‑71 (MQ=255)
                                                                       atgtggccttaAATGCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTAGGGCGGcgttggggctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                                         >  2:661616‑M2/6‑72 (MQ=255)
                                                                          gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                                      <  2:98536‑M2/143‑75 (MQ=255)
                                                                          agccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGTATATAGCCCTATTTACACCGATGATTTCgca                                                                      >  1:850562‑M1/62‑143 (MQ=255)
                                                                          agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                                      >  1:784705‑M1/62‑143 (MQ=255)
                                                                             ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                                   <  1:845358‑M2/143‑78 (MQ=255)
                                                                              actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc                                                                  <  2:503303‑M1/86‑1 (MQ=255)
                                                                               ccaaattCACTTTTGCAATAGCCAGGAATTAAAGGAACTCAAACTTGTTCTTTATTTTGTGCCGggtaacgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                 >  1:990569‑M2/3‑64 (MQ=255)
                                                                                tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCTAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                >  2:687447‑M2/1‑63 (MQ=255)
                                                                                 ggagcacctcaaaaacgccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCTAATATATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTg                                                               >  1:877912‑M1/55‑143 (MQ=255)
                                                                                  gcgcgcttcataaacgccatcatacagtaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCTTTAAATTAGCCAGACAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                              >  2:372679‑M1/54‑143 (MQ=255)
                                                                                  gagcacctcaaacacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                              >  1:607570‑M1/54‑143 (MQ=255)
                                                                                  aaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgag                                                              <  1:602979‑M2/143‑83 (MQ=255)
                                                                                     cgcgtcgaacacaccatcagccacgaaatcggtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCGTAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGt                                                           >  2:1093278‑M1/51‑143 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCAGAGCACGTGAGGCTaa                                                        <  2:3943‑M1/96‑1 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCACTATTGACACCGATGATTTCGCAGCACGTGAGGTtac                                                        <  2:479153‑M1/96‑2 (MQ=255)
                                                                                         ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTGCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                       >  1:846482‑M2/1‑54 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                       <  1:925726‑M1/97‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGCTaaa                                                       <  2:906098‑M1/97‑1 (MQ=255)
                                                                                           aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGACTTCGCAGCACGTGAGGTTAAAAc                                                     <  2:924218‑M1/99‑1 (MQ=255)
                                                                                             gCAATAGCCAGGAATGTAAGTAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                                   >  1:145490‑M2/1‑50 (MQ=255)
                                                                                              aacaccatcatacactaaatcagtaagttggcaggatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGTCGCGGGATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  2:328496‑M1/42‑143 (MQ=255)
                                                                                               acaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                 >  2:962590‑M1/41‑143 (MQ=255)
                                                                                                  ccatcatacacgaaatcagtaagttggcagcatcaccTTGTGCCGCCAGTAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGGTGATTTCGCAGCACGTGAGGTTAAAACTTCCTGa                                              <  1:956152‑M1/106‑1 (MQ=255)
                                                                                                  aGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                              >  1:832222‑M2/1‑45 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATGAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGGTAAAACTTACTGAt                                             <  2:218697‑M1/107‑1 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCCGCACGTGAGGTCAAAAACTCctgta                                             <  2:644710‑M1/107‑3 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                             <  1:201986‑M1/107‑1 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACATCAGGTTAAAACTGCCTGAt                                             <  1:305895‑M1/107‑1 (MQ=255)
                                                                                                     tcatacactacatcagtaaggtcgcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCCGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                           >  1:774286‑M1/35‑143 (MQ=255)
                                                                                                     cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgacagcgacttccgtc                                           <  1:276540‑M2/143‑102 (MQ=255)
                                                                                                      aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactttttcatgcagctccaccgattttgagaacgacagagccttccgccc                                          <  1:910549‑M2/143‑103 (MQ=255)
                                                                                                      aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgacaccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                          <  1:76959‑M2/143‑103 (MQ=255)
                                                                                                       agacactaaatcaggaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                         >  2:269670‑M1/33‑143 (MQ=255)
                                                                                                         acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATACCCCTATTTACACCGATGCATTCGCAGCACGTGAGGTTAAAACTtcctgatgcctgt                                       <  2:298793‑M1/113‑7 (MQ=255)
                                                                                                             tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcctgcgtctccaccgattttgtgacggacagcgacttccgtcccagccgc                                   <  1:582051‑M2/143‑110 (MQ=255)
                                                                                                             tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                                   >  1:754281‑M2/1‑34 (MQ=255)
                                                                                                                ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatcactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgcgaccgacagcgccttccgacccagccctgca                                <  2:701945‑M2/143‑113 (MQ=255)
                                                                                                                       aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                         <  1:924591‑M2/143‑120 (MQ=255)
                                                                                                                         ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag                       <  1:272176‑M1/129‑1 (MQ=255)
                                                                                                                         agttgtTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                       >  2:756876‑M2/3‑22 (MQ=255)
                                                                                                                               tctttcttGTGTGCCGggtaatgtctccaacttatggctagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  2:871484‑M2/1‑16 (MQ=255)
                                                                                                                               tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgtagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  1:67832‑M2/1‑16 (MQ=255)
                                                                                                                               gcatcaccCTGGGCCGCCAACAAAGATCTCTTCATCAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAGTTACCCCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc                 >  1:70060‑M1/9‑143 (MQ=255)
                                                                                                                                cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagat                <  2:894992‑M2/143‑129 (MQ=255)
                                                                                                                                 tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt               <  1:78479‑M2/143‑130 (MQ=255)
                                                                                                                                  gtcttttgtgCGTgttaatgacgtcagcttattgttagtgttttatggtcagataatgcccgatgactgtgtactgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc              >  2:15791‑M2/4‑13 (MQ=255)
                                                                                                                                   caccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAATTCGCAAAACGAGAGGTTAAAACTTCCTGATTCATGTCACATCTTATGGGGAGATTATGGTAg             <  1:547011‑M1/139‑1 (MQ=255)
                                                                                                                                     ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg           <  1:179863‑M2/143‑134 (MQ=255)
                                                                                                                                     ccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGc           <  1:181276‑M1/141‑1 (MQ=255)
                                                                                                                                        tgtgCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTga        >  2:690673/1‑143 (MQ=255)
                                                                                                                                          tgCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg      <  1:306191‑M2/143‑139 (MQ=255)
                                                                                                                                            ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGCGATTATCGTAGGCTgacgcc    >  2:169681/1‑141 (MQ=255)
                                                                                                                                            ccGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattgaggttatgcc    <  1:951144‑M2/143‑141 (MQ=255)
                                                                                                                                              gccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATATTATGGGGAGAATATCGTAGGCTgacgaacc  >  2:733804/1‑140 (MQ=255)
                                                                                                                                              gccAATAAATAGCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTAAACCGATGATTTCGCAGCAAGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCt  >  1:784617/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292897‑1293181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.