Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 48 [0] [0] 49 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)47 (1.150) 41/268 0.1 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG  >  NC_000913/257765‑258040
                                                                                                                                              |                                                                                                                                     
gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA                                                                                                                                       >  2:140849‑M1/1‑143 (MQ=255)
               caaatTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGCTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCGCGTATATTCGCGAAGGTAagtgcaaagctaatc                                                                                                                        >  2:749994‑M1/2‑128 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTGGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                              <  1:265121‑M1/143‑26 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                              <  1:580664‑M1/143‑26 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                              <  1:227400‑M1/143‑26 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                      <  2:427013‑M1/119‑2 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                      >  1:427013‑M1/1‑118 (MQ=255)
                          aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATCTTCGTGAAGGTCagtgcaaagataatcgattctttttc                                                                                                             >  1:51265‑M1/1‑117 (MQ=255)
                            tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACAGAGTGGACACCCGAAGAGCAGAGTGATAAAAAAATTTACCGCACTAGGCCCGTAGATGAGTGAAGGGAagtgcggagatactcgcttctttttctc                                                                                                           >  2:751142‑M1/1‑115 (MQ=255)
                                 tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGATCGTATAATCAACAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                      >  1:289852‑M1/1‑110 (MQ=255)
                                  aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgatactatttcgattgtct                                                                                                     >  1:506126‑M1/1‑109 (MQ=255)
                                   aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaacataatcgcttctttttcgattgtctg                                                                                                    >  1:115538‑M1/1‑108 (MQ=255)
                                    aaCAGTTGCATCACAACAGGAGATAGCAATGACCTTACCGAGTGGCAACCCGAACAGCAGATTGATCAAAAAACTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                   <  2:436920‑M1/143‑37 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtttggc                                                                                                  >  2:140374‑M1/1‑106 (MQ=255)
                                      ctgttGAATAACAAAAGGAGTTAGCAATGACGTGACCAGGTGGACACCCGAAGAGTATATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                 <  2:33517‑M1/141‑39 (MQ=255)
                                              tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgaaaagataatcgattctttttagattggctgggtgtatgcgt                                                                                         >  1:243061‑M1/1‑97 (MQ=255)
                                                    caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgagtcaacgt                                                                                   >  2:237796‑M1/1‑91 (MQ=255)
                                                         gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                              >  1:34552‑M1/1‑86 (MQ=255)
                                                                aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctagctgtatgcgtcaacgtgaaaccggcacc                                                                       >  2:142492‑M1/1‑79 (MQ=255)
                                                                    cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                   <  2:480965‑M1/143‑69 (MQ=255)
                                                                          cGAGTGGGCACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTTGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                             <  2:480449‑M1/143‑75 (MQ=255)
                                                                          cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAggtgcaaagataatcgattctttttcgattgtctggctgtgtgcggcaacgtgaagccggccccgggagtgcgt                                                             >  1:717552‑M1/1‑69 (MQ=255)
                                                                                   acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgagttctgg                                                    >  1:689293‑M1/1‑60 (MQ=255)
                                                                                   acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                    >  1:593695‑M1/1‑60 (MQ=255)
                                                                                   acCCGAAGAGCAGATTAATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                    <  1:140849‑M1/143‑84 (MQ=255)
                                                                                   acCCGAAGACCAGATTGATCAAAAAATTTACCGAACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                    <  1:685423‑M1/143‑84 (MQ=255)
                                                                                     ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggcaccggaagtgcgtgaattctgggg                                                  >  1:501641‑M1/1‑58 (MQ=255)
                                                                                        aaGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttatcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgcattctggggctg                                               >  2:631599‑M1/1‑55 (MQ=255)
                                                                                         agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcagagatagtcgattctttttcgattgtctggctgtatgcgtccacgtgaaaccggcaccggacgtgcgtgaattctggggctgg                                              >  1:232105‑M1/1‑54 (MQ=255)
                                                                                            gCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                           <  1:423131‑M1/143‑93 (MQ=255)
                                                                                             cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                          <  1:543525‑M1/143‑94 (MQ=255)
                                                                                                aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                       >  1:34467‑M1/1‑47 (MQ=255)
                                                                                                  tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                     <  1:27604‑M1/143‑99 (MQ=255)
                                                                                                  tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggacggag                                     >  2:497038‑M1/1‑45 (MQ=255)
                                                                                                    cgcaaAAAATTTGCCGGCCTAGGCGCGTATATTGGTGAAGGTAggtgcaaggataatcgattctttttcgattgtctggctgtatgcgtgaacgtggaaccggcaccgggagtgcgtgaattctggggctggtggatggagct                                   <  2:567581‑M1/141‑101 (MQ=255)
                                                                                                      cAAAAAATGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                 <  2:590999‑M1/143‑103 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacccgaagtgcgtgaatcctggggctgggggatggagcaggg                                >  2:252430‑M1/1‑40 (MQ=255)
                                                                                                        aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtgtacgtgaaaccgacaccggaagtgcgtgaattctggggctggtggatggagctggaa                               >  1:177323‑M1/1‑39 (MQ=255)
                                                                                                        aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                               <  1:251104‑M1/143‑105 (MQ=255)
                                                                                                             tttACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                          <  1:189978‑M1/143‑110 (MQ=255)
                                                                                                                           cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagggctggtatgtttggtctggtggatggagctgggagcgccggaatccagtttta            >  1:146018‑M1/1‑20 (MQ=255)
                                                                                                                            ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac           >  1:463377‑M1/1‑19 (MQ=255)
                                                                                                                            acgTATATTCGTGTAGGTAagtgcaaagttaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac           <  2:608983‑M1/142‑125 (MQ=255)
                                                                                                                                 tatTCGTGAAGGTAggggaaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca      <  1:604682‑M1/143‑130 (MQ=255)
                                                                                                                                 tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgaaagcgcaggcatcccggcttacctacc      >  2:744802‑M1/1‑14 (MQ=255)
                                                                                                                                 gattCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctagggctggtggatggagctggaagcgcaggaatcccgttttacctaca      <  1:749994‑M1/142‑130 (MQ=255)
                                                                                                                                   ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagt    >  1:624397‑M1/1‑12 (MQ=255)
                                                                                                                                     cGTGAAGGTAagtgcaaagataatcgagtctttttcgatggtctggctgtatgcgtaaacgcgaaaccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta  <  1:362044‑M1/143‑134 (MQ=255)
                                                                                                                                              |                                                                                                                                     
GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG  >  NC_000913/257765‑258040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.