New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1387244	37 (0.850)	3 (0.070)	3/268	6.2	7.6%	coding (525/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	NC_000913	= 1387310	38 (0.930)					coding (591/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAAC  >  NC_000913/1387107‑1387386                                                                                                                                          |                                                                                                                                               aaCGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAAGACGTCCTGACcgg                                                                                                                                           >  1:681403/1‑143 (MQ=255)      cTTTAATTTTTTACGTTGGCTGGAAAGCGACCCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGCCcggtgcgg                                                                                                                                      >  1:33664/1‑143 (MQ=255)            ttttttACGTTTGCTGGAAAGCGAACCGCAAGATTCGCATACCCAGCATCATATTCGTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGa                                                                                                                                <  1:570892/143‑1 (MQ=255)             tttttACGGTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGTGGTGGTGac                                                                                                                               <  2:670961/143‑2 (MQ=255)              ttttACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACGGGTGCGGTGGTGATg                                                                                                                              >  1:154436/1‑143 (MQ=255)                        gCTGGAAGGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCaa                                                                                                                    <  1:420735/143‑1 (MQ=255)                           ggAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCACCGa                                                                                                                 >  1:219444/1‑143 (MQ=255)                             aaaGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGCTTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGCTGTTGCGATCAACGAtt                                                                                                               >  1:552937/1‑143 (MQ=255)                             aaaGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGAtt                                                                                                               <  2:9365/143‑1 (MQ=255)                             aaaGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGAtt                                                                                                               <  1:263355/143‑1 (MQ=255)                             aaaGCGAACCGCAAGATGCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGAtt                                                                                                               <  2:736360/143‑1 (MQ=255)                              aaGCGAACCGCAAGATCCCCATAACTCTCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACCCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTc                                                                                                              <  1:141374/143‑1 (MQ=255)                                  gAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGCCCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTAt                                                                                                          >  1:738237/1‑143 (MQ=255)                                                gCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGGGGTGATGTTGCGATCAACGCCTCGTATGGGCCGCGAGCTGc                                                                                            >  2:495940/1‑143 (MQ=255)                                                 cATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCa                                                                                           >  1:777146/1‑143 (MQ=255)                                                     aCGAGCATGGCGTTATTAATGGGCAGAATTTCCGGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAAt                                                                                       <  2:394496/143‑1 (MQ=255)                                                      cGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGCAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTACGGGCCGCCAGCTGCAAACTg                                                                                      >  2:88888/1‑143 (MQ=255)                                                                gTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGGTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCa                                                                            <  2:19809/143‑1 (MQ=255)                                                                         gggCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAg                                                                   >  2:521743/1‑143 (MQ=255)                                                                           gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAACTGTCGCCGCCCAGGACGTCAgcg                                                                 >  2:39691/1‑143 (MQ=255)                                                                           gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAgcg                                                                 >  1:673331/1‑143 (MQ=255)                                                                            cAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCTGTTGCAAAATGTCGCCGCCCAGGCCGTCAgggc                                                                >  1:200810/1‑143 (MQ=255)                                                                              gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCCGTATGAAAATGATCAACACGTCCTGACCGGTCCGGCGCTGATCTTGCGATCAACGATTCGCATGGGCCGCCAGCCGCAACATGTCGCCGCCCAGCACCCCCGCGccc                                                              >  2:697382/1‑142 (MQ=255)                                                                                atgtCCTGGTGGGGATTACGCCTGTTTAGCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGAGGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTc                                                            <  1:344663/140‑1 (MQ=255)                                                                                     cTGATGGAGGTTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCa                                                       <  2:105171/143‑1 (MQ=255)                                                                                     cTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAGATGTCGCGGCCCAGGGCGTCAGCGCCTTCAGTCa                                                       >  1:635862/1‑143 (MQ=255)                                                                                       gctGGAGATTACGCCTGTTTATCTTCCGGATGACAATGATCACCACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCaaa                                                     <  1:477223/141‑1 (MQ=255)                                                                                             gaTTACGCCTGTTTATCTTCAGGATGACAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGACGCCAAGGACGTCAGCGCCTTCAGTCAAATTGTCg                                               <  2:279479/143‑1 (MQ=255)                                                                                              cttgtgCCTGTTGATCTTCAGGATGCATATGATCAGCACGTCCTGACCGGTGCGGTGGTGACGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATGGTCGc                                              <  2:652623/138‑1 (MQ=255)                                                                                               tgaCGCCGGTTTATCTGCAGGATGAAAAGGATCAACACGTCCTGACCGGGGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGcc                                             <  1:277602/141‑1 (MQ=255)                                                                                                 aCGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGt                                           <  2:171486/143‑1 (MQ=255)                                                                                                               tCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGAAGACCAGTACGTTTGTGCCTTCAGTCAAATTGTCGCCGTCAGCCCGCAAATGa                             >  1:328994/1‑143 (MQ=255)                                                                                                                        aaaTGATCCACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAGTTGTCGCCGTCCGCCCGAAGATGAAGCAtgtcg                    >  1:785148/1‑141 (MQ=255)                                                                                                                              tcatcaCGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAAc              <  2:712421/143‑1 (MQ=255)                                                                                                                                  cacGGCCGGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGgc          <  1:762938/143‑1 (MQ=255)                                                                                                                                     gTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGGATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGCCACCCCGGAAATGAAGCATGTTGCCGAACAGgcgaa       >  2:544209/1‑141 (MQ=255)                                                                                                                                          gACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGACGCATGTTGTCGAACAGgcggcgaacc  >  2:718042/1‑136 (MQ=255)                                                                                                                                          |                                                                                                                                               AACGGCTTTAATTTTTTACGTTGGCTGGAAAGCGAACCGCAAGATTCGCATAACGAGCATGTCGTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAAC  >  NC_000913/1387107‑1387386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.