New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 138724437 (0.850)3 (0.070) 3/268 6.2 7.6% coding (525/1542 nt) tyrR aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
?NC_000913 = 1387310 38 (0.930)coding (591/1542 nt) tyrR aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTT  >  NC_000913/1387170‑1387448
                                                                                                                                            |                                                                                                                                          
gTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGGTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCa                                                                                                                                          <  2:19809/143‑1 (MQ=255)
         gggCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAg                                                                                                                                 >  2:521743/1‑143 (MQ=255)
           gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAACTGTCGCCGCCCAGGACGTCAgcg                                                                                                                               >  2:39691/1‑143 (MQ=255)
           gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAgcg                                                                                                                               >  1:673331/1‑143 (MQ=255)
            cAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCTGTTGCAAAATGTCGCCGCCCAGGCCGTCAgggc                                                                                                                              >  1:200810/1‑143 (MQ=255)
              gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCCGTATGAAAATGATCAACACGTCCTGACCGGTCCGGCGCTGATCTTGCGATCAACGATTCGCATGGGCCGCCAGCCGCAACATGTCGCCGCCCAGCACCCCCGCGccc                                                                                                                            >  2:697382/1‑142 (MQ=255)
                atgtCCTGGTGGGGATTACGCCTGTTTAGCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGAGGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTc                                                                                                                          <  1:344663/140‑1 (MQ=255)
                     cTGATGGAGGTTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCa                                                                                                                     <  2:105171/143‑1 (MQ=255)
                     cTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAGATGTCGCGGCCCAGGGCGTCAGCGCCTTCAGTCa                                                                                                                     >  1:635862/1‑143 (MQ=255)
                       gctGGAGATTACGCCTGTTTATCTTCCGGATGACAATGATCACCACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCaaa                                                                                                                   <  1:477223/141‑1 (MQ=255)
                             gaTTACGCCTGTTTATCTTCAGGATGACAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGACGCCAAGGACGTCAGCGCCTTCAGTCAAATTGTCg                                                                                                             <  2:279479/143‑1 (MQ=255)
                              cttgtgCCTGTTGATCTTCAGGATGCATATGATCAGCACGTCCTGACCGGTGCGGTGGTGACGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATGGTCGc                                                                                                            <  2:652623/138‑1 (MQ=255)
                               tgaCGCCGGTTTATCTGCAGGATGAAAAGGATCAACACGTCCTGACCGGGGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGcc                                                                                                           <  1:277602/141‑1 (MQ=255)
                                 aCGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGt                                                                                                         <  2:171486/143‑1 (MQ=255)
                                               tCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGAAGACCAGTACGTTTGTGCCTTCAGTCAAATTGTCGCCGTCAGCCCGCAAATGa                                                                                           >  1:328994/1‑143 (MQ=255)
                                                        aaaTGATCCACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAGTTGTCGCCGTCCGCCCGAAGATGAAGCAtgtcg                                                                                  >  1:785148/1‑141 (MQ=255)
                                                              tcatcaCGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAAc                                                                            <  2:712421/143‑1 (MQ=255)
                                                                  cacGGCCGGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGgc                                                                        <  1:762938/143‑1 (MQ=255)
                                                                     gTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGGATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGCCACCCCGGAAATGAAGCATGTTGCCGAACAGgcgaa                                                                     >  2:544209/1‑141 (MQ=255)
                                                                          gACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGACGCATGTTGTCGAACAGgcggcgaacc                                                                >  2:718042/1‑136 (MQ=255)
                                                                                   tgtggtgATGTTGCGATGGACGATTCGTATGGGGCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGTGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGc                                                       <  2:613543/142‑1 (MQ=255)
                                                                                   gctggtgTTGTTGCGATAAACGTTTCCTATGCGTCGCATTTTGCAAAGTTGCGCCGCCCTGGACGTTCGCCCCTTCAGTCAAATTGTCGCCGTCAGCCCGAGTATGAAGCATGTTTTCGAACAGGCGCAGAAACTGGCGATGc                                                       <  2:189018/141‑1 (MQ=255)
                                                                                    gtggtgATGTTGCGCTCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGCCCCAGAACCTGGCGAtccg                                                      >  2:644429/1‑140 (MQ=255)
                                                                                      ggtgATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTaa                                                    <  1:521743/143‑1 (MQ=255)
                                                                                            gTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAgcgcgc                                              >  2:298159/1‑143 (MQ=255)
                                                                                             ttGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGCTGCCGAACAGGAGCAGCAACTGACGATGCTAAGCGcgcc                                             >  2:220031/1‑143 (MQ=255)
                                                                                                  aTCAACGATTCGCATGGGCCGCCAGTTGCAAAAGGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCgctgc                                        <  1:552787/143‑1 (MQ=255)
                                                                                                   tCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCCCCTTCAGTCAAATTCTCGCCGTCAGCCCGACAACGCAGCCTGTTCTCGAACAGGCGCAGCAACTGGCGACGCTAACCGCGCCgccgct                                       >  2:174543/1‑143 (MQ=255)
                                                                                                          ttCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACg                                <  1:688949/143‑1 (MQ=255)
                                                                                                             ggtgggggCGCCATTTGCAAGATGTCGCGGGCTAGGACGTCAGCGCCTTCAGTGAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGt                             <  2:111688/139‑1 (MQ=255)
                                                                                                                 gggACGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCTCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGGTGGNGATCACGGGTGaca                         >  1:652492/1‑143 (MQ=255)
                                                                                                                    ccgccAGTGGCAAAACGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacag                      <  1:718042/143‑1 (MQ=255)
                                                                                                                        ctgTTGTAAGATGTCGTCGCGCAGGACGTCAGCGCCTTCAGTCAGTTTGTCGCCGTCAGCCCGAAGATGACGCATGTTGTCGAACAGGTGCAGAAGCTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacaggtac                  <  2:286269/141‑1 (MQ=255)
                                                                                                                           ttGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATCACGGGTGACacaggtacagg               >  2:56204/1‑143 (MQ=255)
                                                                                                                               aaaaTGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGCTGCTAAGCGCGCCGCTGCTGATTACGGGTCACACAGGTACAGGTaaa           >  2:235715/1‑143 (MQ=255)
                                                                                                                                  gggTCGCCGCCCAGGGCGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGATGCATGTTGGCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGAt        <  2:23039/141‑1 (MQ=255)
                                                                                                                                     tCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAACTGCAGCATGTTGTCGAACAGGCGCAGAAACTGGCGACGACACGCACGCCGCTGCCGCACTGGGGTGACCCAGGTACAGGTATAgcccac     >  2:721712/1‑138 (MQ=255)
                                                                                                                                        cggccCAAGATGTCACCGCCTTCTGTTAAATTGGCGCCGTCAGCGCGAAAATGAAGCATGTTGTCGAACAGACGCAGATACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCttt  <  2:10841/141‑1 (MQ=255)
                                                                                                                                        ccgccCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCttt  <  1:71492/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                          
GTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTT  >  NC_000913/1387170‑1387448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.