New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1292389 =	46 (0.960)	5 (0.110)	5/264	6.0	10.4%	intergenic (+24/+120)	galU/hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
	?	NC_000913	1292417 =	43 (0.960)					intergenic (+52/+92)	galU/hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGACTGCGGTAATAAATTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAAT  >  NC_000913/1292247‑1292528                                                                                                                                               |                                                                                                                                            aTGACTGCGGTAATAAATTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAAAACTCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGa                                                                                                                                             >  1:553226/1‑143 (MQ=255)   gACTGCGGTAATAAATTAGGTTACATGCAGGTGTAGGTTGGAGACGGAATTCGTCATAACACCCTTGGCACTGAGTTTAAAGCCGTGCTTGAAGAAGAGATGGGCATTAAGAAGTAACAGCCGTATCGGTGTTATCCACGaca                                                                                                                                           >  2:311142/1‑141 (MQ=255)    aCTGCAGTAATAAAGTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAAc                                                                                                                                          <  1:380473/143‑1 (MQ=255)      tGCGGTAATAAATTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCGACGAAACgg                                                                                                                                        >  2:656587/1‑143 (MQ=255)          gTAATCAATTAGGCTTCAGGCAGGCCTTCGGTGACTTGGTCATTCGTCATAACACCCTTGGCACGGAATTTAGAGCCTTGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGtt                                                                                                                                    <  2:112943/143‑1 (MQ=255)              taaATTAGGTTACATGCAGGCCTTCGTGGAATACGGTGTTCGCCCAAACACCAATTTGTGTTTTTTTAAAGCCTGGCGTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGc                                                                                                                                <  1:403373/143‑1 (MQ=255)               aaaTTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCa                                                                                                                               >  1:862118/1‑143 (MQ=255)                  ttAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTCTCGGTGTTGTCCACGAAACGGCCTTGAGCAATc                                                                                                                            >  1:242481/1‑143 (MQ=255)                       ttACATGCAGGCCTTCGTGGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGc                                                                                                                       <  1:759518/143‑1 (MQ=255)                         aCATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGTAATCGACGCCg                                                                                                                     <  1:859862/143‑1 (MQ=255)                          cATGCAGGCGTTCGTGGAAGACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGt                                                                                                                    <  2:423729/143‑1 (MQ=255)                              cAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTCTAAGAAGAGCTGGGCCTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGttttt                                                                                                                >  1:449346/1‑143 (MQ=255)                               aGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGAGGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttt                                                                                                               <  1:132853/143‑1 (MQ=255)                                   cTTCGTTGAATACGGTATTCGTCATAAAACCCTTGGCCCGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttttcga                                                                                                           >  2:818458/1‑140 (MQ=255)                                      cggtGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAGCATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGct                                                                                                        <  2:27552/140‑1 (MQ=255)                                        gtGAATACGGTATGCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCCTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGctta                                                                                                      <  2:58959/142‑1 (MQ=255)                                            aTACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGACGTTGAGCAATCGACGCCGTTTTTTTATAGcttattct                                                                                                  >  1:563631/1‑143 (MQ=255)                                              aCGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGcttattctta                                                                                                >  1:593112/1‑143 (MQ=255)                                                ggTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGCGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCAACCCCGTCTTTCTACAGctcattcctaat                                                                                              >  2:245532/1‑141 (MQ=255)                                                           tAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCGTATTCGTAGTAAATTGTCTTa                                                                                   >  1:67805/1‑143 (MQ=255)                                                                cccGTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCg                                                                              <  1:347214/143‑1 (MQ=255)                                                                   ttGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACTGGAc                                                                           >  1:498229/1‑143 (MQ=255)                                                                   ttGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGAc                                                                           <  1:312326/143‑1 (MQ=255)                                                                       aaCGGAATTTAAAGCCTGGCTTGAAGAAGAGATCGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATa                                                                       <  2:681987/142‑1 (MQ=255)                                                                                    gCCTGGCGTGAAGAAGGGATGGGCGTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTGTAGCTTATTCTTATTAAAGTGTCTTAAACCGGACAATAAAAAATCccgccg                                                          <  2:459614/143‑1 (MQ=255)                                                                                     ccTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGCCAATAAAAAATCCcgccgc                                                         >  1:554187/1‑143 (MQ=255)                                                                                       tGGCTTGAAGAAAAGTACGTCATTAAGAAGTATCATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTg                                                       <  2:398174/143‑1 (MQ=255)                                                                                             gaacaggagaTGGGCATTGAGGAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGTCGCTGTTGTTTTATAGCTTACTCTTATTTAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGa                                                 <  2:30173/137‑1 (MQ=255)                                                                                                 aagaGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAtttt                                             >  1:84329/1‑143 (MQ=255)                                                                                                  agagATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTa                                            <  1:608093/143‑1 (MQ=255)                                                                                                      aTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAACACCCCGCCGCTGCCCGGATGTTACGCa                                        >  2:567933/1‑143 (MQ=255)                                                                                                           cATTAAGAAGTAACATCCGTATCGGTGTTATCAACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAATTTAAGCAAGTGc                                   >  2:412351/1‑143 (MQ=255)                                                                                                             ttAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCACGTGCag                                 >  2:800775/1‑142 (MQ=255)                                                                                                             ttAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCaa                                 >  1:383753/1‑143 (MQ=255)                                                                                                              tAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAAt                                >  1:653909/1‑143 (MQ=255)                                                                                                                 gaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                             <  1:113449/143‑1 (MQ=255)                                                                                                                 gaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                             >  1:745686/1‑143 (MQ=255)                                                                                                                 gaagTAACATCCGTAGCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                             <  2:736773/143‑1 (MQ=255)                                                                                                                  aagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGGTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAGTTTAAGCAAGTGCAATCTAc                            >  1:304832/1‑143 (MQ=255)                                                                                                                     tAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACaaa                         <  2:663132/143‑1 (MQ=255)                                                                                                                             gTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTCCAAAAGattatt                 >  1:867174/1‑143 (MQ=255)                                                                                                                                    tgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGAt          >  1:13282/1‑143 (MQ=255)                                                                                                                                     gtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATc         <  2:553226/143‑1 (MQ=255)                                                                                                                                      ttATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACAGGACAAGAAAAAATCACGCAGCTGGCGGGATTTTAAGCAAGTACAACCTACAAAAGATTAATGATTGATCa        >  2:660505/1‑143 (MQ=255)                                                                                                                                        aTCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAgg      <  2:546441/143‑1 (MQ=255)                                                                                                                                            aCGACACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAAt  <  2:546560/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            ATGACTGCGGTAATAAATTAGGTTACATGCAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAAT  >  NC_000913/1292247‑1292528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.