New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1292389 =	46 (0.960)	5 (0.110)	5/264	6.0	10.4%	intergenic (+24/+120)	galU/hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
	?	NC_000913	1292417 =	43 (0.960)					intergenic (+52/+92)	galU/hns	glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTCATCCATTGC  >  NC_000913/1292276‑1292559                                                                                                                                              |                                                                                                                                               cAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTCTAAGAAGAGCTGGGCCTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGttttt                                                                                                                                               >  1:449346/1‑143 (MQ=255)  aGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGAGGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttt                                                                                                                                              <  1:132853/143‑1 (MQ=255)      cTTCGTTGAATACGGTATTCGTCATAAAACCCTTGGCCCGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttttcga                                                                                                                                          >  2:818458/1‑140 (MQ=255)         cggtGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAGCATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGct                                                                                                                                       <  2:27552/140‑1 (MQ=255)           gtGAATACGGTATGCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCCTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGctta                                                                                                                                     <  2:58959/142‑1 (MQ=255)               aTACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGACGTTGAGCAATCGACGCCGTTTTTTTATAGcttattct                                                                                                                                 >  1:563631/1‑143 (MQ=255)                 aCGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGcttattctta                                                                                                                               >  1:593112/1‑143 (MQ=255)                   ggTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGCGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCAACCCCGTCTTTCTACAGctcattcctaat                                                                                                                             >  2:245532/1‑141 (MQ=255)                              tAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCGTATTCGTAGTAAATTGTCTTa                                                                                                                  >  1:67805/1‑143 (MQ=255)                                   cccGTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCg                                                                                                             <  1:347214/143‑1 (MQ=255)                                      ttGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACTGGAc                                                                                                          >  1:498229/1‑143 (MQ=255)                                      ttGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGAc                                                                                                          <  1:312326/143‑1 (MQ=255)                                          aaCGGAATTTAAAGCCTGGCTTGAAGAAGAGATCGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATa                                                                                                      <  2:681987/142‑1 (MQ=255)                                                       gCCTGGCGTGAAGAAGGGATGGGCGTTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTGTAGCTTATTCTTATTAAAGTGTCTTAAACCGGACAATAAAAAATCccgccg                                                                                         <  2:459614/143‑1 (MQ=255)                                                        ccTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGCCAATAAAAAATCCcgccgc                                                                                        >  1:554187/1‑143 (MQ=255)                                                          tGGCTTGAAGAAAAGTACGTCATTAAGAAGTATCATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTg                                                                                      <  2:398174/143‑1 (MQ=255)                                                                gaacaggagaTGGGCATTGAGGAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGTCGCTGTTGTTTTATAGCTTACTCTTATTTAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGa                                                                                <  2:30173/137‑1 (MQ=255)                                                                    aagaGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAtttt                                                                            >  1:84329/1‑143 (MQ=255)                                                                     agagATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTa                                                                           <  1:608093/143‑1 (MQ=255)                                                                         aTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAACACCCCGCCGCTGCCCGGATGTTACGCa                                                                       >  2:567933/1‑143 (MQ=255)                                                                              cATTAAGAAGTAACATCCGTATCGGTGTTATCAACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAATTTAAGCAAGTGc                                                                  >  2:412351/1‑143 (MQ=255)                                                                                ttAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCACGTGCag                                                                >  2:800775/1‑142 (MQ=255)                                                                                ttAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCaa                                                                >  1:383753/1‑143 (MQ=255)                                                                                 tAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAAt                                                               >  1:653909/1‑143 (MQ=255)                                                                                    gaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                                                            >  1:745686/1‑143 (MQ=255)                                                                                    gaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                                                            <  1:113449/143‑1 (MQ=255)                                                                                    gaagTAACATCCGTAGCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTa                                                            <  2:736773/143‑1 (MQ=255)                                                                                     aagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGGTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGAGTTTAAGCAAGTGCAATCTAc                                                           >  1:304832/1‑143 (MQ=255)                                                                                        tAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACaaa                                                        <  2:663132/143‑1 (MQ=255)                                                                                                gTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTCCAAAAGattatt                                                >  1:867174/1‑143 (MQ=255)                                                                                                       tgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGAt                                         >  1:13282/1‑143 (MQ=255)                                                                                                        gtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATc                                        <  2:553226/143‑1 (MQ=255)                                                                                                         ttATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACAGGACAAGAAAAAATCACGCAGCTGGCGGGATTTTAAGCAAGTACAACCTACAAAAGATTAATGATTGATCa                                       >  2:660505/1‑143 (MQ=255)                                                                                                           aTCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAgg                                     <  2:546441/143‑1 (MQ=255)                                                                                                               aCGACACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAAt                                 <  2:546560/143‑1 (MQ=255)                                                                                                                       gctgtGAGCAATCGACGGCGTTTTTTTATAGCTTATTCTTATTAAAGTGTCTTAAACCCAACAATACAAAACCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAgg                         <  2:421862/139‑1 (MQ=255)                                                                                                                         gTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGa                       >  2:606005/1‑143 (MQ=255)                                                                                                                          ttGGGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCGTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGAt                      <  2:287776/143‑1 (MQ=255)                                                                                                                          ttGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGCACTACAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGAt                      >  1:600447/1‑143 (MQ=255)                                                                                                                           tGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGAtt                     <  1:311142/143‑1 (MQ=255)                                                                                                                               cAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGAATTAGACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCTTCGAcggctatccc                 >  2:62305/1‑136 (MQ=255)                                                                                                                                 aTCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACAtt               >  1:277617/1‑143 (MQ=255)                                                                                                                                   cGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGACTTACCTTGc             <  1:555861/143‑1 (MQ=255)                                                                                                                                     aCGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCTCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTCTTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTc           >  2:607023/1‑143 (MQ=255)                                                                                                                                         cGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTCATcc       >  2:557773/1‑143 (MQ=255)                                                                                                                                            ttttttATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAGTCCCGCCGCTGGCGGGATTTTAAGGAAGTGCGGTCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTCATCCAtt    <  1:687366/143‑1 (MQ=255)                                                                                                                                              ttttATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTCATCCATTGc  >  1:721731/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               CAGGCCTTCGTTGAATACGGTATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTTACCTTGCTCATCCATTGC  >  NC_000913/1292276‑1292559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.