| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1939099 = | NA (NA) | 3 (0.070) | 3/266 | 7.2 | NA | noncoding (1/30 nt) | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1939129 = | NA (NA) | intergenic (+38/+93) | pykA/lpxM | pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATG > NC_000913/1938959‑1939231 | tggcAGCGAGGCGGGTAATCTTCTGCGCGATAAACGTTACTTGATGTCTGGTGTCCTCGTAATTGTCATCCAGGTCGACGTCATGAGTACCGTGAGTTCTACTAATACCACGCTTATTTTAACGGTAGAGTAAGTACGTTGcc < 2:662646/140‑1 (MQ=255)tGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCGAGGGCGACGTGATGAGTACCGTGGGTTCTGCTCATACCACGCCTATTTTCACGGTAGAGTACGTTCGGTGcc > 2:465901/1‑143 (MQ=255) cgccgcaGCTGTTATTCTTCTGCGCTATAAAGGTTACTTGAGGTGTGGTGACCTGGTGATTGTCACCCACGGCGACGTGATGAGTACCGTGGGTTCTACTAATGCCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGa < 2:211065/137‑1 (MQ=255) cGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGGGGAAGTACGTTGCCGGATgc > 2:405932/1‑143 (MQ=255) aaGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCGAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATgcgg < 1:704722/143‑1 (MQ=255) aaGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAAGGGTAGAGTAAGTACGTTGCCGGATgcgg > 2:506342/1‑143 (MQ=255) aGCGGTTAATCTGCTGCGCGATGAAGGTTACTGGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATgcggc < 1:174747/143‑1 (MQ=255) cGGTTAATCTGGTGGGCTATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACGGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGa < 2:355534/143‑1 (MQ=255) cGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGa < 1:162426/143‑1 (MQ=255) gTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGGGGCGaaa > 1:773001/1‑143 (MQ=255) aTCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGAACAGGACATTCTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGCAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGc < 2:620408/143‑1 (MQ=255) tCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATACGGCGAAAACGcc > 1:862299/1‑143 (MQ=255) cgAGAAAGGTTACTTGATGTCTGGTGACCTGGTGAGTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGc < 1:697200/143‑1 (MQ=255) atgaaGGTTGCTTGATGTCGGGTGGCCTGGTGATTGTCGCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACGAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCt < 2:367341/140‑1 (MQ=255) ggtACGTGAGGTCTGGTGGCCTGGTGATGGTGACGCGGGGGGAGGTGATGAGTGGCGTGGGTTGTAGTGATACCGCGCGGATTTTAACGGTAGAGTGAGTACGTTGCCGGATGCGGCGAGAACGCCACTTCCGGCCTACAGtt < 2:841251/141‑1 (MQ=255) accggATGTCGAGTGACCGGGCGATGGCCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGACCACGCCACATCCGGCCTACAGTTCaa < 1:134600/139‑1 (MQ=255) aCTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACTCTTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCaa < 1:81592/143‑1 (MQ=255) cTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATTAGTACCGTGGCTTCTACTAATACCACGCGTATTTTAACTGTCGAGTAAGTACGTTGCCGTATGCGGCGAAAACGCAACATCCGGCCTACAATTCAAt > 1:72789/1‑143 (MQ=255) tGTCTGGTGACCTGGTGATTGTCACCCAGAGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAACGAtcg > 2:236034/1‑141 (MQ=255) ggTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCaa < 1:629050/143‑1 (MQ=255) ggTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACAACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCaa < 1:53164/143‑1 (MQ=255) tGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTGCATTAACGTTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATCGTTCACCa > 1:553718/1‑143 (MQ=255) ccTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAGTGATAGTTCAACAGAt > 2:324334/1‑143 (MQ=255) tGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCCACAGAttt > 1:847409/1‑143 (MQ=255) aCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTg < 2:588622/143‑1 (MQ=255) aCCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTAAACAGAGTTCGAATATTcgg > 2:228769/1‑141 (MQ=255) aGGGCGACGTGATGAGTACCGTGGGTTCTAATAAAATAGAGCGTATGTTAACGGTAGAGTAAGTACATTGCATATGGCTCAGAAAAGCCCTCGGCCTGGCTGCAGTTGAAGGATAGTGCAACAGAGTTCGGATATTCTGAAgg > 2:16131/1‑142 (MQ=255) gCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCaaa < 1:589450/143‑1 (MQ=255) atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCAGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGCAGCAAACTTGAACt > 1:178539/1‑143 (MQ=255) gTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAATACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACTGATTTCGAATATTCTGAAGCAAACTTGAACTTatc < 1:810410/143‑1 (MQ=255) tACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatca > 1:577173/1‑143 (MQ=255) ccGTGCGTACTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACTTCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatcatc < 1:124645/143‑1 (MQ=255) gTGGGTTCTACTAATTCCACGGGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACAGCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAg < 2:256645/143‑1 (MQ=255) gTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAg < 2:685281/143‑1 (MQ=255) gTGGGTTCTACTAATACCACGCGTAATTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACCTGAACTTATCAACAg > 2:172729/1‑143 (MQ=255) tGGGTTCTACTAACACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAgg < 1:479098/143‑1 (MQ=255) ggTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCg > 1:421056/1‑143 (MQ=255) aTACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCtctc > 1:762478/1‑143 (MQ=255) aCCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTctcct < 1:785841/143‑1 (MQ=255) gTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCCACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCgaga > 1:495464/1‑143 (MQ=255) tATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCACTGATAGTTCAACAGTTGTCGACTCCGCGGAATCAAACCTGAACTTATCATCAGGCGGAGGCCTCTCTGCGCGggag > 1:599851/1‑143 (MQ=255) ttttAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCCAGAAGc > 2:534935/1‑143 (MQ=255) aaCGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCTGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCtttt > 1:268335/1‑143 (MQ=255) ggTAGAGTAAGTACGTTGCCGGATGCAGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCAAACGCCTCTCCTCGCGAGAGGCCTTTTTa > 2:226200/1‑143 (MQ=255) gTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGACGCCAACTTGAACTTATCATCAGGCGAAGGCCTATAATCGAGAGAGGCATTTTTAt > 1:213650/1‑143 (MQ=255) tatagtaagtgCGTTGCCGGATGCGGCGAAATCGTCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCTAATATTCTGAAGCAATCTTGAACTTTTTCTCAGGCGATGGCCCCTCCTCGCTATATGCGTTTTTAtt < 2:628705/140‑1 (MQ=255) tAGCGTCAGTACGTTGGCGTATGCGGCGAAAGCGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAtt < 2:669857/143‑1 (MQ=255) tAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAtt < 1:613155/143‑1 (MQ=255) taagtaCGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATg > 2:774713/1‑143 (MQ=255) | TGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATG > NC_000913/1938959‑1939231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |