New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)35 (0.740) 31/280 0.6 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 1306932 = 0 (0.000)coding (219/330 nt) yciU UPF0263 family protein

TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG  >  NC_000913/1306791‑1307071
                                                                                                                                             |                                                                                                                                           
cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgcacaggagggacagctgatagaaacagaagccactggagcacctccaaaacaccgtcatacactaaatcggtaagttggcagcatcaccCa                                                                                                                                            >  1:671352‑M2/142‑143 (MQ=255)
        tccggcggtgcgtttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCa                                                                                                                                    <  1:307109‑M2/10‑1 (MQ=255)
                   ggttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaactccatcatacacgagataagtaagttggcggcatcaccCACTTCGGCAAAAAAGTCCgg                                                                                                                         <  2:718846‑M2/21‑1 (MQ=255)
                      tgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGtt                                                                                                                      <  1:418368‑M2/24‑1 (MQ=255)
                        ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCa                                                                                                                    >  1:518748‑M2/118‑143 (MQ=255)
                                 accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCGAGACAGTCCGGGTTCAAATCGACAt                                                                                                           >  1:218293‑M2/109‑143 (MQ=255)
                                   caccccggcagtagatgaagaggagggacagatgagagaaacagaagccactgaagcaccacaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCa                                                                                                         <  2:526104‑M2/37‑1 (MQ=255)
                                         gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGt                                                                                                   <  1:532538‑M2/43‑1 (MQ=255)
                                               agctgaacaggagggacagctgagagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGc                                                                                             <  2:369123‑M2/49‑1 (MQ=255)
                                                gctgaacaggagggacagctgatagaaacagaagccgctggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGcc                                                                                            <  2:393605‑M2/50‑1 (MQ=255)
                                                             gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCgg                                                                               <  1:864776‑M2/63‑1 (MQ=255)
                                                              acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAAAATGTACAAACCAGTCTTCCGCCGGa                                                                              >  1:361252‑M2/80‑143 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa                                                                         <  1:701511‑M2/69‑1 (MQ=255)
                                                                   tgatagaaacagaagccactggagcaccccaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa                                                                         <  2:681562‑M2/69‑1 (MQ=255)
                                                                                 gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgc                                                           >  1:520640‑M2/61‑143 (MQ=255)
                                                                                   cactgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTGCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgccg                                                         <  2:539942‑M2/85‑1 (MQ=255)
                                                                                        gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTACGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGctc                                                    >  1:449510‑M2/54‑143 (MQ=255)
                                                                                           cacgtcaaaaacaccatcatacactagagcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTc                                                 <  2:363056‑M2/93‑1 (MQ=255)
                                                                                             cctcaaaaacaccatcatacactaaatcagtaagttggcaggatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCTGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaa                                               >  1:606259‑M2/49‑143 (MQ=255)
                                                                                              ctcaaaaacaccatcacccacgtaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaaa                                              <  1:26185‑M2/96‑1 (MQ=255)
                                                                                              cgcaaagacacgatcatactgtgcagcagtaagttggccgcagcaccCACTTCGGCAAAAAAGTCCGGGTTCAAAGCGAAATCAACAGGTTCCTGCCAGTCGTCCGCCGGACCGAATAACTCCGCGCCGCCGCGCTCTTCaaa                                              <  2:125350‑M2/96‑1 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAGCTCCGCGCCGCCGCGCTCTTCAGAc                                             >  1:541799‑M2/47‑143 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCacac                                             >  1:218060‑M2/47‑143 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAAc                                             <  1:642500‑M2/97‑1 (MQ=255)
                                                                                                    aaccccatcatacactaaagcagtaagctggcagcatcaccCACTTCAGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAg                                        <  1:665383‑M2/102‑1 (MQ=255)
                                                                                                     acaccatcatacactaaatcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCGGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGa                                       <  1:620651‑M2/103‑1 (MQ=255)
                                                                                                       gccagcatacactgaagcagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGAtt                                     <  1:608739‑M2/105‑1 (MQ=255)
                                                                                                                cctcaaatcagtaagttggctgcagcgccCATGTCGGCAAAAGTGTCCGGGTTCAAGTCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAAcagcag                            <  2:748046‑M2/114‑1 (MQ=255)
                                                                                                                        cagtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCGGAACATCAg                    <  1:542469‑M2/122‑1 (MQ=255)
                                                                                                                         agtaagttggcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGc                   <  2:368738‑M2/123‑1 (MQ=255)
                                                                                                                           ttgggtggcaggatcagcCGCTTCGGCAAAAGAGTCCGGGTGCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCGGGATCGAGTAACGCCGCGCCGCAGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTg                 <  2:32366‑M2/125‑1 (MQ=255)
                                                                                                                                  gcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGCAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCgag          <  1:303147‑M2/132‑1 (MQ=255)
                                                                                                                                  gcagcatcaccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAgctggagtgag          >  1:438999‑M2/12‑138 (MQ=255)
                                                                                                                                       atcgccCACTTCGGCAAACAAGTCCGGGGTCAAATGGAACTCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGt     <  2:118623‑M2/137‑1 (MQ=255)
                                                                                                                                         caccCACTTCGGCAAAAAAGTCCGGGTTCAAATCGACATCAACAGGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg   <  1:279424‑M2/139‑1 (MQ=255)
                                                                                                                                          acccacTTCGGCAAAAAAAGGCGGGTTCAAATCGAAATCAACATGTTACTGCCAGTCTTACGCCGGATCGAATAAATCCGCGCCGCCGCGCACCTCAAACTGAAGATTGAACAGCAGAAACGCACCTGGATAGAGATTGGCgc  >  2:314856/3‑142 (MQ=255)
                                                                                                                                             |                                                                                                                                           
TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG  >  NC_000913/1306791‑1307071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.