Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258674 258683 10–776 48 [0] [0] 49 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)45 (1.000) 40/266 0.1 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/257766‑258046
                                                                                                                                             |                                                                                                                                           
tgtTAAAAATTTTCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                            <  1:344506‑M1/143‑2 (MQ=255)
            gCTAAATTTTGCCAATTTGGTCCAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa                                                                                                                                <  2:213715‑M1/143‑14 (MQ=255)
             cTAAATTTTGCCAATTGGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                               <  1:755871‑M1/143‑15 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGACGAGCAGATTGATCAAAAAATTTACCGCACGACGCCCGTATAGTCGTGAAGCTAagtgcaaagataatc                                                                                                                              >  2:203138‑M1/1‑128 (MQ=255)
               aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg                                                                                                                             >  2:82980‑M1/1‑127 (MQ=255)
                aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                            >  1:353644‑M1/1‑126 (MQ=255)
                     cgcCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCAAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGCGAAGGTAagtgcaaagataatcgattctt                                                                                                                       <  1:67460‑M1/142‑23 (MQ=255)
                          aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                  <  1:716588‑M1/143‑28 (MQ=255)
                                     cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAGCGGGGGGGCACACATATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                       <  1:403891‑M1/143‑39 (MQ=255)
                                         tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat                                                                                                   <  1:839759‑M1/143‑43 (MQ=255)
                                           cATCACAACGGGAGATAGCAATGACGTTACCGAGTGGACAGCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAattgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                 <  2:194904‑M1/143‑45 (MQ=255)
                                            aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                >  1:261079‑M1/1‑98 (MQ=255)
                                             ccacagCAGGAGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACTGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                               <  2:648192‑M1/142‑47 (MQ=255)
                                                    agagaatagaaATGACGTTACCTAGTGGACACGCGAAGAGCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                        <  2:81533‑M1/138‑54 (MQ=255)
                                                    aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                        <  1:557817‑M1/143‑54 (MQ=255)
                                                         aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATCTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaacc                                                                                   >  1:242412‑M1/1‑85 (MQ=255)
                                                         aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                   >  1:743623‑M1/1‑85 (MQ=255)
                                                          tAGCAATGACGTTACCGAGTGGACACCCGAATAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg                                                                                  <  2:867590‑M1/143‑60 (MQ=255)
                                                           aGCAATGACGTTACCGAGGGGACACCCGAAGAGCCGAGTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                                 <  1:6406‑M1/143‑61 (MQ=255)
                                                           aGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                                 <  1:807730‑M1/143‑61 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                              <  1:843529‑M1/143‑64 (MQ=255)
                                                                   ggtTACCGAGTGGCCACCCGAAGAGCAGACTGATCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                         <  1:188855‑M1/142‑69 (MQ=255)
                                                                    gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgagctcgggaccggcag                                                                        >  1:183785‑M1/1‑74 (MQ=255)
                                                                       aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgcctgtctgcgtcgacgtgaaaccgtccccggacgtcc                                                                     >  1:728636‑M1/1‑71 (MQ=255)
                                                                        ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                    <  1:578477‑M1/143‑74 (MQ=255)
                                                                         cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                   <  2:107769‑M1/143‑75 (MQ=255)
                                                                               gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                             <  1:813118‑M1/143‑81 (MQ=255)
                                                                                   cccGAAGACCAGCTTTATCAAAACATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttttcgattgtctggctgtattcgtcaacgtgaaaccggcacctgaagtgcgtgaattctgg                                                         <  2:210639‑M1/143‑85 (MQ=255)
                                                                                          agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                  >  1:524799‑M1/1‑52 (MQ=255)
                                                                                               aTTGATCAAACAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                             <  1:209621‑M1/143‑97 (MQ=255)
                                                                                                   aTCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTAAAAGTAagtggatgggtggtcgattctttttcgatggtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                         <  1:239880‑M1/143‑101 (MQ=255)
                                                                                                            tttCCCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                <  2:580197‑M1/143‑110 (MQ=255)
                                                                                                                acgaaatagccccGGATGTTCGTGAAGGTAagtggaaagacaatcgatgctggttcgattgtctggctgtatgcgtcaacgtgaaaccgggaccggaagagcgttaattctggggctggtggatggagctggaagcgcaggaa                            <  2:392385‑M1/137‑114 (MQ=255)
                                                                                                                 cGCACTAGGCCCGTATATTCGTGAACGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtcactcctgcggctggtggatgaagccgcacccgcaggccc                           >  2:611497‑M1/1‑29 (MQ=255)
                                                                                                                     ataGGCCCCTATATTCGTGAAGGTAagtgcaaagctacacgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccg                       <  2:710567‑M1/142‑119 (MQ=255)
                                                                                                                      tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgggtggagctggaagcgcaggaatcccgt                      >  1:469416‑M1/1‑24 (MQ=255)
                                                                                                                       aGGCCCGTATATTCGTGAAGGTAagttccaagataatagaagtgtggcgggtggtccggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                     <  1:732239‑M1/143‑121 (MQ=255)
                                                                                                                           ccGTGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                 <  1:747004‑M1/143‑125 (MQ=255)
                                                                                                                           ccGTATGTTTGTGAAGGTAagtgcaaagataatcgatgctttttcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                 <  2:560454‑M1/143‑125 (MQ=255)
                                                                                                                           ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaaacgaacacggtgtggtttggggctggtggatggagctggaagcgcaggaatcccgttttac                 >  1:639613‑M1/1‑19 (MQ=255)
                                                                                                                             gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggcaccggacgtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct               >  1:78896‑M1/1‑17 (MQ=255)
                                                                                                                                tatTCGTGTAGGTAagtgcaaggataatcgattctttttcgatgggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca            <  2:408233‑M1/143‑130 (MQ=255)
                                                                                                                                tatTCGGGAGGGTAagtgcacagacaatcgattctttttcgattggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgtattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca            <  2:75601‑M1/143‑130 (MQ=255)
                                                                                                                                 atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggactggtggcttgggctggaagcgaaggaatctcgttttccttacag           >  1:542228‑M1/1‑13 (MQ=255)
                                                                                                                                   tCGTGAAGGGAagcgcaaagagaatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt         <  1:76657‑M1/143‑133 (MQ=255)
                                                                                                                                     gcgaaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac       <  1:64031‑M1/141‑135 (MQ=255)
                                                                                                                                       gcacgtaagtgcaaagctaatcgattctttttcgattgtcgggctgtatgcgtcaacgtggaaccggcaccggacgtgcgtgaattctggggctggtggacggagctggaagcgcaggaatcccgttttacctacagttacca     <  2:165269‑M1/139‑137 (MQ=255)
                                                                                                                                          gggaagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt  <  1:149392‑M1/140‑140 (MQ=255)
                                                                                                                                             |                                                                                                                                           
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/257766‑258046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: