| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 25 [0] | [0] 25 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 22 (0.800) | 21/270 | 0.3 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909171‑3909451 | aTTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGCATTGGGCGGCGGCGTCATATCAGTGGACAGCGCCAGCGACATACCGCCGATACGGAGAGTGAGGAGGCACATTAAAATCACGACCAGCCAGgc > 2:190370‑M1/1‑141 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGAACGCCACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca < 2:252987‑M1/143‑12 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagg < 1:89671‑M1/143‑24 (MQ=255) agCGTTCGCCAGCCCACCACCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggc < 2:76091‑M1/143‑26 (MQ=255) cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaccagggcgataccgaa > 2:340746‑M1/1‑109 (MQ=255) ccaccTTCCGTATTGGTCGGCGGCGTCATTTCAGTTAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAACATCCCGATCAGCCAGgcgcacgctcagtcaggaacagggcgataccgaaactcacc < 2:346294‑M1/143‑42 (MQ=255) caccTTCCGTATTGGGCGGCGGCGTCATTTCAGTAAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgatacccaaactcaccg > 2:133078‑M1/1‑101 (MQ=255) gttgGGCGGCGGCGTCATTGCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 1:211083‑M1/142‑53 (MQ=255) aTTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgcaactcaccgggacggcgat > 2:181401‑M1/1‑91 (MQ=255) aTTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 1:64167‑M1/143‑53 (MQ=255) tGGGCGGTGGCGTCATTTTAGTGAACAGCGCCAGCGACGTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGGTCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatca < 2:350383‑M1/143‑55 (MQ=255) cggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggacaaggaccataccgaaactcaccaggacggcgatcagcag > 2:422764‑M1/1‑85 (MQ=255) tttCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgacactcaccgggacggccatcagcagcgcgctagacg > 2:462892‑M1/1‑74 (MQ=255) gcaagcgTCTTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgta < 1:293925‑M1/140‑84 (MQ=255) ccAGCGTCATACCGTCGATAGCGCGAGGGAGGGTGGACATTAAAAGCCATATGGGCCAGgcgcaagctccgtcaggaacggggtgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtac < 2:523937‑M1/143‑85 (MQ=255) cGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaccagggcgataccgaaactcaccgagaagtagttcagcagcgcgataaacgaagtcaccatcgtaccgtagataggca > 1:219244‑M1/1‑47 (MQ=255) tCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataacgaaattcaccgggacggcgatcagcagcgcgataaacgaagtcggcaacgtaccgtagatcggcacc > 1:263248‑M1/1‑45 (MQ=255) tggtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgaagacat > 2:428072‑M1/1‑29 (MQ=255) aTTAAAATCAAGATCAGCGTGtcgcaagcttagtcagcaacagggcgataccgaaactcaccgggacggcgctcagcagcgcgataaacgaagccaccaccgtaccgtagatcggcaccagcgccccgtagaactcgtgccgc > 2:347357‑M1/1‑21 (MQ=255) taacgtccggaTCAGCCACgcgcaagctccgtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgc < 1:188913‑M1/138‑125 (MQ=255) aaaTCCAGATCAGCCAGtcgcaagctcagtcaggaacagggcgatcaccaatctcaccgaaacgatggacagcagtactataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcat < 1:266795‑M1/143‑127 (MQ=255) cAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtcgatatcgatcggtgcatcccac > 2:411717‑M1/1‑12 (MQ=255) gCCAGgcgcaagctcagtcaggagcagggcgataccgatccgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttgg < 1:166096‑M1/143‑139 (MQ=255) gCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttgg < 1:232001‑M1/143‑139 (MQ=255) cAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagagcgaggaacggggtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtc > 1:471689‑M1/1‑3 (MQ=255) | ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909171‑3909451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |