| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 13 [0] | [2] 15 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 11 (0.580) | 11/270 | 0.6 | 91.7% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 2 (0.110) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGT > NC_000913/3909950‑3910224 | cagcccgctacccgccagagcgttcgccagaccaccacctgccgtattgggcggcggcgtcattccagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaatccagatcagccagGCGCAAg > 2:115479‑M2/137‑143 (MQ=255) caagtgcgttcgccccaccaccaccttccttattggtcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACa < 2:68055‑M2/21‑1 (MQ=255) cttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacataaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGa > 1:223257‑M2/99‑143 (MQ=255) atttggctgcggcgtcatttctgtgaatttcttttgcgacatagcttcgataccgcgagagatggtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAt < 1:259294‑M2/52‑1 (MQ=255) gcggcggcgtcatttcagtgaacagcgccagcgacattccgtctataccgcgagtgattgtggacattaaaggccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATcagca < 1:181820‑M2/57‑1 (MQ=255) gcgtcgtttcagtgaacagcgccagcgacataccgtcgataccgcgagtggtggtggacattaaaatcccgatcagccagGCGCAAGCTCAGTCAGGTACAGGGCGATCCCGAAACTCACCGGGACGGCGATCAGCAGCGCGa < 1:106724‑M2/63‑1 (MQ=255) cgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGCACAGGCCGATACCGAAACTCAACGGGACAGCGATCAACAGCGCGATAAAAGAAGTAACAaacaa > 1:165598‑M2/62‑141 (MQ=255) accgtcgataccgcgagtgatggtggacattaaaatccagctcagccagGCGCACGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGAAACGGCAATCAGCAGCGCGATAAACGAAGTCAACAACGTACCGTAGATCgg > 1:36128‑M2/50‑143 (MQ=255) ccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCCAACACCAACACGATAAACAAAGAAACCAAAGTAACGTAAATCGGc > 1:81225‑M2/49‑143 (MQ=255) ccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCGCAGGATCGTAGATCGGCACCAGCGcc < 2:227981‑M2/104‑1 (MQ=255) gatggtcgacattaatattcatatcagctagTCTCAATCTCATTCTTGAACAGGGCGATACCGAAACTAACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGat < 1:44341‑M2/112‑1 (MQ=255) ccAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGCTCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGtcc > 2:347211/1‑141 (MQ=255) gcagccagGCGCGAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCtt < 1:385806‑M2/135‑1 (MQ=255) ccagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACAGAAACTCACCGGGTCGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCtt < 1:285731/143‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGCAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATAGATCGGTACATCACACCCTTTGGt > 1:211945‑M2/5‑143 (MQ=255) | ATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGT > NC_000913/3909950‑3910224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |