Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,909,312 Δ774 bp [pstA][pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909312 3910085 774 13 [0] [2] 15 [pstA]–[pstC] [pstA],[pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093110 (0.000)11 (0.580) 11/270 0.6 91.7% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910086 = 2 (0.110)coding (313/960 nt) pstC phosphate ABC transporter permease

CAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCC  >  NC_000913/3909176‑3909450
                                                                                                                                       |                                                                                                                                           
cAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTGCCGTATTGGGCGGCGGCGTCATTCCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGCGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaag                                                                                                                                      >  2:115479‑M1/1‑136 (MQ=255)
              caagtgcgttcGCCCCACCACCACCTTCCTTATTGGTCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaca                                                                                                                        <  2:68055‑M1/138‑22 (MQ=255)
                                      cTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATAAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccggga                                                                                                >  1:223257‑M1/1‑98 (MQ=255)
                                             aTTTGGCTGCGGCGTCATTTCTGTGAATTTCTTTTGCGACATAGCTTCGATACCGCGAGAGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat                                                                                         <  1:259294‑M1/143‑53 (MQ=255)
                                                  gcggcggcgTCATTTCAGTGAACAGCGCCAGCGACATTCCGTCTATACCGCGAGTGATTGTGGACATTAAAGGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagca                                                                                    <  1:181820‑M1/143‑58 (MQ=255)
                                                        gcgTCGTTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGGTGGTGGACATTAAAATCCCGATCAGCCAGgcgcaagctcagtcaggtacagggcgatcccgaaactcaccgggacggcgatcagcagcgcga                                                                              <  1:106724‑M1/143‑64 (MQ=255)
                                                                           cgcCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggcacaggccgataccgaaactcaacgggacagcgatcaacagcgcgataaaagaagtaacaaacaa                                                           >  1:165598‑M1/1‑61 (MQ=255)
                                                                                       aCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGCTCAGCCAGgcgcacgctcagtcaggaacagggcgataccgaaactcaccgaaacggcaatcagcagcgcgataaacgaagtcaacaacgtaccgtagatcgg                                               >  1:36128‑M1/1‑49 (MQ=255)
                                                                                        ccGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggccaacaccaacacgataaacaaagaaaccaaagtaacgtaaatcggc                                              >  1:81225‑M1/1‑48 (MQ=255)
                                                                                                 ccGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccgcaggatcgtagatcggcaccagcgcc                                     <  2:227981‑M1/143‑105 (MQ=255)
                                                                                                         gATGGTCGACATTAATATTCATATCAGCTAGtctcaatctcattcttgaacagggcgataccgaaactaaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagat                             <  1:44341‑M1/143‑113 (MQ=255)
                                                                                                                                gcaGCCAGgcgcgagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctt      <  1:385806‑M1/142‑136 (MQ=255)
                                                                                                                                    ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgcagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatagatcggtacatcacaccctttggt  >  1:211945‑M1/1‑4 (MQ=255)
                                                                                                                                       |                                                                                                                                           
CAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCC  >  NC_000913/3909176‑3909450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: