New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1715908 =	47 (1.160)	3 (0.080)	3/262	5.9	6.2%	intergenic (‑19/+40)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
	?	NC_000913	1715934 =	48 (1.280)					intergenic (‑45/+14)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGA  >  NC_000913/1715767‑1716049                                                                                                                                              |                                                                                                                                              agatagAACGGCGCTCAGCGGCCAGACGTCCGCGCCCAGGCGGCGCACCCGAAACTCTGCCGCACTGTTACCCGCATGACCATAATCAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAg                                                                                                                                              <  1:202799/138‑1 (MQ=255)  aaTTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATCAAAACCAgg                                                                                                                                             >  1:82847/1‑143 (MQ=255)               tCAGCGGCCGGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTtct                                                                                                                                <  2:534197/143‑1 (MQ=255)               tCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGCGTtct                                                                                                                                >  2:85715/1‑143 (MQ=255)                cAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATCGCGCGCATATTTTTCATCATGTTCCCTGTATAAAAACCAAGGGGAGTGACTtctt                                                                                                                               >  1:618964/1‑142 (MQ=255)                  gCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGAGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACAAGGGGGAGAGACTTCTAAc                                                                                                                             >  2:214470/1‑143 (MQ=255)                     gCCGGACGGGCGCGCCCGGGCGGCGCATGGGAGGGTCTGCCGGAGTGTTACCCGCATGGCCGGAAACAACGTGAGACTGGATAGCGAGGATATGTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTcc                                                                                                                          <  2:119338/143‑1 (MQ=255)                                  gcCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTa                                                                                                             >  1:660524/1‑143 (MQ=255)                                      aGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCACCTTTCCACTTAATGc                                                                                                         >  1:725255/1‑143 (MQ=255)                                           gcgcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCattac                                                                                                    >  2:499206/1‑142 (MQ=255)                                             gcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTAACTCCCCCTTTCCACTTAAATCATTAttt                                                                                                  >  2:251955/1‑143 (MQ=255)                                              cATGGGAACCTCTGCCGCGCGGGTACCCGCATGTGCATGAACAACGTGAGACTGGATAGCGAGGATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTc                                                                                                 <  2:517059/143‑1 (MQ=255)                                                 cGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                              <  2:26980/143‑1 (MQ=255)                                                 cGGAAACGCTGCCGCACTGTTGCCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                              <  1:411586/143‑1 (MQ=255)                                                  ggAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGc                                                                                             >  1:680487/1‑143 (MQ=255)                                                     agctctGCCGCACTGTTACCCGCATGACCATAAACGACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                          <  2:385728/141‑1 (MQ=255)                                                     aagtctGCCGCAGTGTTACCCGCATGACCATAAACATCGGGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACGCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                          <  2:381288/140‑1 (MQ=255)                                                        tctGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAACACCAGGGGGAGTAATTTCTCACTCCCCCTTCCCACATAATGCATCATTTCCAGCAAATCa                                                                                       >  2:535521/1‑143 (MQ=255)                                                               cACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTa                                                                                <  1:425848/143‑1 (MQ=255)                                                                       cccGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                        <  1:408031/143‑1 (MQ=255)                                                                       accccATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                        <  1:20108/139‑1 (MQ=255)                                                                            aTGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTACCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTCTACcg                                                                   <  1:47743/143‑1 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATGATGTTCCCTGTATAAAAACCAGGGGGAGTGAGTTCTCACTCCCCCTTTCCGCTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTAACGCGaag                                                              >  1:68182/1‑141 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                              <  2:339746/143‑1 (MQ=255)                                                                                 cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                              <  1:483206/143‑1 (MQ=255)                                                                                       caacGGGAGACTGTATAGCCGGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTaa                                                        <  2:316094/143‑1 (MQ=255)                                                                                            tGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTCAATGCATTATTTCAAGCCACTCAGCCAGTAACTCTTTTTACCGCGACGCAGTAAGGTaa                                                   >  2:321375/1‑143 (MQ=255)                                                                                                aCTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTACCGCGACGAAGTACGTTAAAACg                                               >  1:5486/1‑143 (MQ=255)                                                                                                  atgATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGAc                                             <  1:366426/141‑1 (MQ=255)                                                                                                      tAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGCGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCaaa                                         <  2:83213/143‑1 (MQ=255)                                                                                                         cGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGCCCAAACAg                                      >  1:13261/1‑143 (MQ=255)                                                                                                          gagaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGa                                     >  1:659213/1‑143 (MQ=255)                                                                                                           ttcatatTTTTCATCATGTTCCCTGTATAATCATCAGTGGGAGTGATTTCTCACTCCTCCTTTCCACTTAATGCTTTATTTCCAGCAAATTATACAGTAATTCTTTTTACCTCTACGTAGTAAGGTAAAACGACCAAACAGAc                                    <  2:73481/140‑1 (MQ=255)                                                                                                            gaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACg                                   <  1:14474/143‑1 (MQ=255)                                                                                                             aaTATTTTTCATCACGTTCCCTGTATAAAAGCCAGGGGGAGTGATTTCTCGCTCCCCCTTTCCACTTAATGCATGACTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGa                                  <  1:700303/143‑1 (MQ=255)                                                                                                               tatTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGCCGGTAATTCTTTTTACCGCGACGCCGTAAGATAAAACGACCAACCCGACGAtc                                >  2:74971/1‑143 (MQ=255)                                                                                                               tatGTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGAtc                                <  2:192201/143‑1 (MQ=255)                                                                                                                       atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTCCCGCGACGCGCTAAGGAAACACGACCAAACAGACGGccttctacta                        >  2:477112/1‑142 (MQ=255)                                                                                                                       atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                        <  1:212249/143‑1 (MQ=255)                                                                                                                       atcatGTTCCCTGTAGAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                        >  2:617274/1‑143 (MQ=255)                                                                                                                              tCCCTGTATAAAAACAAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATGTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAaagaa                 <  2:483135/143‑1 (MQ=255)                                                                                                                                  tGTATAACAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTAt             <  2:201482/143‑1 (MQ=255)                                                                                                                                     ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa          <  1:14832/143‑1 (MQ=255)                                                                                                                                     ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa          >  1:682836/1‑143 (MQ=255)                                                                                                                                       aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCACATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg        >  2:440881/1‑143 (MQ=255)                                                                                                                                       aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg        >  1:3904/1‑143 (MQ=255)                                                                                                                                             cAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGa  <  1:511624/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              AAATTGAACGGTGTTCAGCGGCCAGACGTTCGCGCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGA  >  NC_000913/1715767‑1716049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.