New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1715908 =	47 (1.160)	3 (0.080)	3/262	5.9	6.2%	intergenic (‑19/+40)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
	?	NC_000913	1715934 =	48 (1.280)					intergenic (‑45/+14)	pdxY/tyrS	pyridoxamine kinase/tyrosyl‑tRNA synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGC  >  NC_000913/1715800‑1716076                                                                                                                                       |                                                                                                                                               gcCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTa                                                                                                                                        >  1:660524/1‑143 (MQ=255)     aGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCACCTTTCCACTTAATGc                                                                                                                                    >  1:725255/1‑143 (MQ=255)          gcgcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCattac                                                                                                                               >  2:499206/1‑142 (MQ=255)            gcATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTAACTCCCCCTTTCCACTTAAATCATTAttt                                                                                                                             >  2:251955/1‑143 (MQ=255)             cATGGGAACCTCTGCCGCGCGGGTACCCGCATGTGCATGAACAACGTGAGACTGGATAGCGAGGATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTc                                                                                                                            <  2:517059/143‑1 (MQ=255)                cGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                                                         <  2:26980/143‑1 (MQ=255)                cGGAAACGCTGCCGCACTGTTGCCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAg                                                                                                                         <  1:411586/143‑1 (MQ=255)                 ggAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGc                                                                                                                        >  1:680487/1‑143 (MQ=255)                    agctctGCCGCACTGTTACCCGCATGACCATAAACGACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                                                     <  2:385728/141‑1 (MQ=255)                    aagtctGCCGCAGTGTTACCCGCATGACCATAAACATCGGGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACGCCCCCTTTCCACTTAATGCATTATTTCCAGCaaa                                                                                                                     <  2:381288/140‑1 (MQ=255)                       tctGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAACACCAGGGGGAGTAATTTCTCACTCCCCCTTCCCACATAATGCATCATTTCCAGCAAATCa                                                                                                                  >  2:535521/1‑143 (MQ=255)                              cACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTa                                                                                                           <  1:425848/143‑1 (MQ=255)                                      cccGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                                                   <  1:408031/143‑1 (MQ=255)                                      accccATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTGCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCtttt                                                                                                   <  1:20108/139‑1 (MQ=255)                                           aTGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTACCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTCTACcg                                                                                              <  1:47743/143‑1 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATGATGTTCCCTGTATAAAAACCAGGGGGAGTGAGTTCTCACTCCCCCTTTCCGCTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTAACGCGaag                                                                                         >  1:68182/1‑141 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                                                         <  2:339746/143‑1 (MQ=255)                                                cATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACg                                                                                         <  1:483206/143‑1 (MQ=255)                                                      caacGGGAGACTGTATAGCCGGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTaa                                                                                   <  2:316094/143‑1 (MQ=255)                                                           tGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTCAATGCATTATTTCAAGCCACTCAGCCAGTAACTCTTTTTACCGCGACGCAGTAAGGTaa                                                                              >  2:321375/1‑143 (MQ=255)                                                               aCTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCGGCAAATCAGACAGTACTTCTTTTTACCGCGACGAAGTACGTTAAAACg                                                                          >  1:5486/1‑143 (MQ=255)                                                                 atgATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGAc                                                                        <  1:366426/141‑1 (MQ=255)                                                                     tAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGCGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCaaa                                                                    <  2:83213/143‑1 (MQ=255)                                                                        cGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGCCCAAACAg                                                                 >  1:13261/1‑143 (MQ=255)                                                                         gagaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGa                                                                >  1:659213/1‑143 (MQ=255)                                                                          ttcatatTTTTCATCATGTTCCCTGTATAATCATCAGTGGGAGTGATTTCTCACTCCTCCTTTCCACTTAATGCTTTATTTCCAGCAAATTATACAGTAATTCTTTTTACCTCTACGTAGTAAGGTAAAACGACCAAACAGAc                                                               <  2:73481/140‑1 (MQ=255)                                                                           gaATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACg                                                              <  1:14474/143‑1 (MQ=255)                                                                            aaTATTTTTCATCACGTTCCCTGTATAAAAGCCAGGGGGAGTGATTTCTCGCTCCCCCTTTCCACTTAATGCATGACTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGa                                                             <  1:700303/143‑1 (MQ=255)                                                                              tatTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGCCGGTAATTCTTTTTACCGCGACGCCGTAAGATAAAACGACCAACCCGACGAtc                                                           >  2:74971/1‑143 (MQ=255)                                                                              tatGTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGAtc                                                           <  2:192201/143‑1 (MQ=255)                                                                                      atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTCCCGCGACGCGCTAAGGAAACACGACCAAACAGACGGccttctacta                                                   >  2:477112/1‑142 (MQ=255)                                                                                      atcatGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                                                   <  1:212249/143‑1 (MQ=255)                                                                                      atcatGTTCCCTGTAGAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATcttcttctt                                                   >  2:617274/1‑143 (MQ=255)                                                                                             tCCCTGTATAAAAACAAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATGTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAaagaa                                            <  2:483135/143‑1 (MQ=255)                                                                                                 tGTATAACAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTAt                                        <  2:201482/143‑1 (MQ=255)                                                                                                    ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa                                     <  1:14832/143‑1 (MQ=255)                                                                                                    ataAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCa                                     >  1:682836/1‑143 (MQ=255)                                                                                                      aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCACATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg                                   >  2:440881/1‑143 (MQ=255)                                                                                                      aaaaaCCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAgg                                   >  1:3904/1‑143 (MQ=255)                                                                                                            cAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGa                             <  1:511624/143‑1 (MQ=255)                                                                                                               ggggAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACTGCGTCGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTg                          >  2:225909/1‑143 (MQ=255)                                                                                                                  taGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  1:122735/142‑1 (MQ=255)                                                                                                                  gAGTGGTTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  2:678395/143‑1 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTTATTCTTTTTACCGCGCAGCAGTGGGGTAACCCGCCATAACCGAGGATCTTATGCTTTAAAGAAGTATCGAGGATGGGACTGttt                       >  1:499150/1‑143 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTGCTTTAACGAAGTATTCGGGATCGGACTGttt                       >  2:165895/1‑143 (MQ=255)                                                                                                                  gAGTGATTTCTCACTCCCCCTTTCCACTTAATGCAGTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGttt                       <  2:439288/143‑1 (MQ=255)                                                                                                                    gTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGACCGGACTGttttt                     >  1:37617/1‑143 (MQ=255)                                                                                                                      gATTTCGCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAAAAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCa                   <  2:125753/143‑1 (MQ=255)                                                                                                                            tcACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTa             >  1:5875/1‑143 (MQ=255)                                                                                                                             cACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTGTTCAGGATCGGACTGTTTTTCACCGTTaa            >  1:588520/1‑143 (MQ=255)                                                                                                                               cTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATg          <  1:251955/143‑1 (MQ=255)                                                                                                                               cTCCCCCTTTCCACCTAATGCGTTATTTCCAGCAAATCAGACAGTAACTCTTTTTACCGCGACGCAGTAATGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATg          <  1:493036/143‑1 (MQ=255)                                                                                                                                     cTTTCCACTTCATGCCTTATTTCCAGCGAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATg    <  2:12973/143‑1 (MQ=255)                                                                                                                                       ttCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGc  >  1:245529/1‑143 (MQ=255)                                                                                                                                       ttCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCATTAAAGAAGTATTCAGGATCGGACAGTTTTTCAACGTAATGGGTTATGGc  >  2:212974/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                               GCCCAGGCGGCGCATCGGAAACTCTGCCGCACTGTTACCCGCATGACCATAAACAACGTGAGACTGGATAGCGAGAATATTTTTCATCATGTTCCCTGTATAAAAACCAGGGGGAGTGATTTCTCACTCCCCCTTTCCACTTAATGCATTATTTCCAGCAAATCAGACAGTAATTCTTTTTACCGCGACGCAGTAAGGTAAAACGACCAAACAGACGATCTTCTTCTTTAAAGAAGTATTCAGGATCGGACTGTTTTTCACCGTTAATGGTGATGGC  >  NC_000913/1715800‑1716076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.