New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2884485 =	55 (1.110)	3 (0.070)	3/248	7.0	5.8%	intergenic (‑347/+68)	casA/ygcB	CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
	?	NC_000913	2884503 =	49 (1.140)					intergenic (‑365/+50)	casA/ygcB	CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTA  >  NC_000913/2884345‑2884622                                                                                                                                             |                                                                                                                                           aaaTCTGCAAGTGATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTc‑c                                                                                                                                         <  1:890265/143‑1 (MQ=255)         aaGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTaa                                                                                                                                 <  2:897301/143‑1 (MQ=255)           gTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGt                                                                                                                               >  1:99705/1‑143 (MQ=255)             tATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAg                                                                                                                             <  1:95004/143‑1 (MQ=255)              aTTCGTTTTAATAATAAAGAAACTTTTAGTTATAATAATTATCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAgg                                                                                                                            <  1:59026/143‑1 (MQ=255)                   ttttATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGaagg                                                                                                                       <  1:15596/143‑4 (MQ=255)                   ttttATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATaa                                                                                                                       >  2:81976/1‑143 (MQ=255)                         tattaAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCATC‑CCTACTTAAGTAGGGATAAACCGtt                                                                                                                 <  2:900674/143‑1 (MQ=255)                               aGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGt                                                                                                           <  2:655143/143‑1 (MQ=255)                                gAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGACTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTc                                                                                                          <  2:447280/143‑1 (MQ=255)                                 aaaCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAAGCTCATACCGGGAAATTAACAGAAGCTGTACATTGTGCACCTTC‑CCTACTTAAGTAGGCATACACCCTTATCAGTCt                                                                                                         >  1:203709/1‑143 (MQ=255)                                  aaCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGCAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCtt                                                                                                        <  2:885797/143‑1 (MQ=255)                                   aCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCtta                                                                                                       <  1:696325/143‑1 (MQ=255)                                   aCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCtta                                                                                                       >  1:563965/1‑143 (MQ=255)                                    cTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCttat                                                                                                      <  1:603701/143‑1 (MQ=255)                                    cTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCttat                                                                                                      >  2:220969/1‑143 (MQ=255)                                     ttttAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     >  1:581796/1‑143 (MQ=255)                                     ttttAGTTACAAAAATTACACTGTATTTTATTACATAAAATATTCATACAGTGAATATAAAATCTCATACCAGGAAATTAAAAGAAGATGTACATTGTGTGCCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     <  2:481281/143‑1 (MQ=255)                                     tttgAGTTATAATAATGACCATGAAGTTTATTACATAAAATATTCAGACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCttatt                                                                                                     <  2:46813/143‑1 (MQ=255)                                        tAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATc                                                                                                  >  1:43383/1‑143 (MQ=255)                                             ataataATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTCTTGGCCTTATTATCGTCAt                                                                                             >  2:123511/1‑143 (MQ=255)                                                ataatTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGa                                                                                          <  2:48685/143‑1 (MQ=255)                                                 taatTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                         <  1:107601/143‑1 (MQ=255)                                                 taatTACCATGAAATTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                         <  1:103631/143‑1 (MQ=255)                                                         aggAATTTTATTACATAAAATATGCATACTGTGAATATAAAACCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCa                                                                                 <  1:761365/141‑1 (MQ=255)                                                         aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAGATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCACATTGGGGGCATTGATAACAATCa                                                                                 >  1:332332/1‑143 (MQ=255)                                                         aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAGCAATCa                                                                                 >  1:351187/1‑143 (MQ=255)                                                           gAATTTTATTAAATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCAtt                                                                               <  2:686719/143‑1 (MQ=255)                                                            aaTTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATACCCATCATTc                                                                              >  1:184482/1‑143 (MQ=255)                                                                        tAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTAttt                                                                  >  1:174060/1‑143 (MQ=255)                                                                         aaaaTATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCACGAAGTTATTTg                                                                 >  1:461139/1‑143 (MQ=255)                                                                         aaaaTATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCATCATTGATAACAATCATTCCCGAAGTTCTTTg                                                                 >  2:94856/1‑143 (MQ=255)                                                                                   tACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAg                                                       <  2:437973/143‑1 (MQ=255)                                                                                   tACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACAGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAg                                                       >  2:133982/1‑143 (MQ=255)                                                                                      tgtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACACTCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                    <  2:472777/143‑1 (MQ=255)                                                                                       gtgGATATCAACTCTCCTACCGGGAAATTAAAAGAAGATGTGGGGTGTG‑ACCTTCAGGAACACGAGTATGGATGCGCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGAt                                                   <  1:417197/143‑1 (MQ=255)                                                                                          aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGAc                                                >  2:519711/1‑143 (MQ=255)                                                                                             ataAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGActct                                             <  2:314024/143‑1 (MQ=255)                                                                                                   tctcATACCGGGAAATTAAAAGAAGATGTCCATTGCGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGCCTTATTATCGTCATTGATAACAATCATTCCCGCAGCTATTTGGGACTTGCAGCCCTGActctcgcccc                                       >  2:154208/1‑137 (MQ=255)                                                                                                   tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCAt                                       <  1:106697/143‑1 (MQ=255)                                                                                                        tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt                                  >  1:708055/1‑143 (MQ=255)                                                                                                        tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt                                  >  1:708054/1‑143 (MQ=255)                                                                                                        tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGCATTTGCAGGGCTGACCCTCGTCATCCCtt                                  >  2:787321/1‑143 (MQ=255)                                                                                                            gggAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTGAGTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATc                              <  2:542326/143‑1 (MQ=255)                                                                                                              gAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:840345/143‑1 (MQ=255)                                                                                                              gAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:81976/143‑1 (MQ=255)                                                                                                              gAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                            <  1:365541/143‑1 (MQ=255)                                                                                                                    aaaaGAAGATGTACATTTTTCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTTGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGtat                      <  2:836099/143‑1 (MQ=255)                                                                                                                     aaaGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGtata                     <  1:865797/143‑1 (MQ=255)                                                                                                                       agaagaTGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAgg                   <  1:700452/143‑1 (MQ=255)                                                                                                                        gatgaTGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTCTTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGTCTCTGGTCATCCCTTCATCCCCTGTATAGGt                  <  1:113318/140‑1 (MQ=255)                                                                                                                             tGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATCAAGCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGtaataa             <  1:166213/143‑1 (MQ=255)                                                                                                                                     gtgCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGGCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTGTGGTCATCCCTTCATCCCCTGTGTAGGTAATAACAATACTg     >  1:541235/1‑143 (MQ=255)                                                                                                                                        cACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATGACAATCATTCCCGAAGTTATTTGGGATTGGCAGTGATGACTCTGGTCATCCCTTCATCCCCTGTATAGTGAGTAACAATACGGttg  >  1:709965/1‑142 (MQ=255)                                                                                                                                        cACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTa  >  1:578370/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                           AAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTC‑CCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTA  >  NC_000913/2884345‑2884622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.