Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 46 [0] [0] 46 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)46 (1.000) 39/264 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATC  >  NC_000913/3815718‑3815980
                                                                                                                                            |                                                                                                                          
cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCCCCCCCCTCTCCTTAAGGGTCAGTTAGCCAGCGCCGCCTTCTGCcg                                                                                                                          >  1:413238‑M1/1‑141 (MQ=255)
cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcg                                                                                                                          >  1:724253‑M1/1‑141 (MQ=255)
    tacgtgctaagcGCAACTTCGATCAACTGGCGCTGATATGATTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                      <  2:235602‑M1/139‑7 (MQ=255)
           tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                               >  1:846809‑M1/1‑130 (MQ=255)
             aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATAAGTTTGCCAGCGACGCCTTCTGCcgtcccctgcacttc                                                                                                             >  1:483462‑M1/1‑128 (MQ=255)
                   aaTTCAATAAACTCGCGCTGATATGGTTTCATGCCTTCGCACCTCATCTTACTATTCTACCCACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAACCAGTCTGCCAGCGCCGCCTTCTGCcgccccccgcacttcaatgat                                                                                                       <  2:214188‑M1/143‑22 (MQ=255)
                    aTTCAATAAACTCGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                      <  1:477110‑M1/143‑23 (MQ=255)
                         aTAAACTGGCGCTGATATGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc                                                                                                 <  1:447629‑M1/143‑28 (MQ=255)
                                    cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccggcacatcaatcatgcgcccgccctcggtca                                                                                      >  2:220021‑M1/1‑105 (MQ=255)
                                     gaatatggTTGCGATCCTTCGCTCCCCATCTTACTTTTCTACAGACAAGAAAAGGGCGACTCATCAGTCGCCTTAAATATCCGTTTGTCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                     <  2:789130‑M1/141‑40 (MQ=255)
                                       atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttctgtcatca                                                                                   >  2:123254‑M1/1‑102 (MQ=255)
                                           ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                                               <  2:868037‑M1/143‑46 (MQ=255)
                                            gTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAACAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                              <  1:757536‑M1/143‑47 (MQ=255)
                                             ttgcatgCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                             <  1:746251‑M1/140‑48 (MQ=255)
                                               tcgtgccGTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                           <  1:392808‑M1/140‑50 (MQ=255)
                                               tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgggcccgtcttcggtcatcactccgttc                                                                           >  1:597386‑M1/1‑94 (MQ=255)
                                                          ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcagttcggtgtc                                                                >  1:4117‑M1/1‑83 (MQ=255)
                                                           tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGAcgacccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgttggtcgct                                                               >  1:514760‑M1/1‑82 (MQ=255)
                                                                   ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggcaga                                                       >  1:299026‑M1/1‑74 (MQ=255)
                                                                       ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                   >  1:83177‑M1/1‑70 (MQ=255)
                                                                       ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctgcggcagagcct                                                   >  2:139472‑M1/1‑70 (MQ=255)
                                                                           cTACAGACAATTAAATGGCTACTCATCAGTCGCCTTAAAAATCAGGTTGCCAGCGCCGCCTACTGCagttcccggcagttcaatgctgcgcgcgtcttctgtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                               <  1:83931‑M1/143‑78 (MQ=255)
                                                                           cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                               <  1:421397‑M1/143‑78 (MQ=255)
                                                                            tACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcgggctcttcgccagggccttcaac                                              >  2:235365‑M1/1‑65 (MQ=255)
                                                                            tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcaggtcggtctctgcggtagagtcttcagc                                              >  1:92348‑M1/1‑65 (MQ=255)
                                                                             aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg                                             >  1:113925‑M1/1‑64 (MQ=255)
                                                                                      aaaagGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                    <  2:768167‑M1/143‑89 (MQ=255)
                                                                                       aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttaaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                   <  1:86244‑M1/143‑90 (MQ=255)
                                                                                        aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcatttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                  <  1:858276‑M1/143‑91 (MQ=255)
                                                                                         aaGGCGCCCCACCAGTCGCCGTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagagtcttcaacgtattccagatcg                                 <  2:499396‑M1/143‑92 (MQ=255)
                                                                                            gCGACTCATCAGTCGTCTTAAAGAGCTGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccttcttcggtcatgactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa                              <  2:415783‑M1/143‑95 (MQ=255)
                                                                                              gACGCAGCAGTCGCATTAAAAATGAGTTGGCCCGCGCCGCCTCCTGCcgtcccctgcacttcaatgatgcgcacgtcatcggtcagcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac                            <  1:340178‑M1/143‑97 (MQ=255)
                                                                                               cctgatcaggcgCGTGAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcgcccgtcttcggtcagcactacgttcatgtcggtctctgcggcagggtcttcaacgtattccagatcgcaaacc                           <  2:447776‑M1/139‑98 (MQ=255)
                                                                                                cTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcgctacgttcatgtcggtctctgcggccgagtcttcaacgtattcgcgatcgcacacgg                          >  1:180942‑M1/1‑45 (MQ=255)
                                                                                                   atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggccgagtcttcaacgtattccagagcgcaaaccgctg                       >  1:27649‑M1/1‑42 (MQ=255)
                                                                                                   atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt                       >  1:734337‑M1/1‑42 (MQ=255)
                                                                                                       gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcacgtcggtctctgcgccagagtcttcaacggattccagctcgcaaaccgctacgcc                   >  2:448715‑M1/1‑38 (MQ=255)
                                                                                                        tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatggtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg                  <  1:33285‑M1/143‑107 (MQ=255)
                                                                                                           tctgaaaaatcagTTTGCGAGCGCCGTCTTCGGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc               <  1:682088‑M1/139‑110 (MQ=255)
                                                                                                             ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac             >  1:170425‑M1/1‑32 (MQ=255)
                                                                                                             ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtattcaacgtagtccagatcgcaaaccgcttcgcaggtcac             >  1:274264‑M1/1‑32 (MQ=255)
                                                                                                               aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa           <  1:289650‑M1/143‑114 (MQ=255)
                                                                                                                   aTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgccaaccgcttcgccgttcacagttcc       >  1:885164‑M1/1‑26 (MQ=255)
                                                                                                                   aTCAGTTTGCCAGCGCCGACTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcgtcaacgtattccagatcgcaaaccgcatcgacgttcacaagtcc       >  2:20827‑M1/1‑26 (MQ=255)
                                                                                                                      agttgtccagggccGCCGTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac    <  2:243563‑M1/137‑121 (MQ=255)
                                                                                                                        tttGCCAACGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgtgcacaagtccgacag  >  1:532294‑M1/1‑21 (MQ=255)
                                                                                                                                            |                                                                                                                          
CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATC  >  NC_000913/3815718‑3815980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.