Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 46 [0] [0] 46 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)46 (1.000) 39/264 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAG  >  NC_000913/3815800‑3816062
                                                                                                                                             |                                                                                                                         
cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgccccccccctctccttaagggtcagttagccagcgccgccttctgcCg                                                                                                                          >  1:413238‑M2/142‑143 (MQ=255)
cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCg                                                                                                                          >  1:724253‑M2/142‑143 (MQ=255)
    tacgtgctaagcgcaacttcgatcaactggcgctgatatgatttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                      <  2:235602‑M2/6‑1 (MQ=255)
           taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                               >  1:846809‑M2/131‑143 (MQ=255)
             agcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagaccaaaaaaaggcgactcatcagtcgccttaaaaataagtttgccagcgacgccttctgcCGTCCCCTGCACTTc                                                                                                             >  1:483462‑M2/129‑143 (MQ=255)
                   aattcaataaactcgcgctgatatggtttcatgccttcgcacctcatcttactattctacccacaaaaaaaaggcgactcatcagtcgccttaaaaaccagtctgccagcgccgccttctgcCGCCCCCCGCACTTCAatgat                                                                                                       <  2:214188‑M2/21‑1 (MQ=255)
                    attcaataaactcgcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                      <  1:477110‑M2/22‑1 (MQ=255)
                         ataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                 <  1:447629‑M2/27‑1 (MQ=255)
                                    ctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCGGCACATCAATCATGCGCCCGCCCTCGGtca                                                                                      >  2:220021‑M2/106‑143 (MQ=255)
                                     gaatatggttgcgatccttcgctccccatcttacttttctacagacaagaaaagggcgactcatcagtcgccttaaatatccgtttgtcagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                     <  2:789130‑M2/39‑1 (MQ=255)
                                       atatggtttcatgccttcgctcctcatcttacttttatacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCTGtcatca                                                                                   >  2:123254‑M2/103‑143 (MQ=255)
                                           ggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                                               <  2:868037‑M2/45‑1 (MQ=255)
                                            gtttcatgccttcgctcctcatcttacttttctacagacaacaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                                              <  1:757536‑M2/46‑1 (MQ=255)
                                             ttgcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                                             <  1:746251‑M2/47‑1 (MQ=255)
                                               tcgtgccgtcgctcctcatcttacttgtctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                           <  1:392808‑M2/49‑1 (MQ=255)
                                               tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGGGCCCGTCTTCGGTCATCACTCCGTTc                                                                           >  1:597386‑M2/95‑143 (MQ=255)
                                                          ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTGCAGTTCGGtgtc                                                                >  1:4117‑M2/84‑143 (MQ=255)
                                                           tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccgtaaaaatcagtttgccagcgccgccttctgaCGACCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTTGGTcgct                                                               >  1:514760‑M2/83‑143 (MQ=255)
                                                                   ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCaga                                                       >  1:299026‑M2/75‑143 (MQ=255)
                                                                       ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                   >  1:83177‑M2/71‑143 (MQ=255)
                                                                       ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCCCTGCGGCAGAGCCt                                                   >  2:139472‑M2/71‑143 (MQ=255)
                                                                           ctacagacaattaaatggctactcatcagtcgccttaaaaatcaggttgccagcgccgcctactgcAGTTCCCGGCAGTTCAATGCTGCGCGCGTCTTCTGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                               <  1:83931‑M2/77‑1 (MQ=255)
                                                                           ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                               <  1:421397‑M2/77‑1 (MQ=255)
                                                                            tacaggcaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGGCTCTTCGCCAGGGCCTTCAAc                                              >  2:235365‑M2/66‑143 (MQ=255)
                                                                            tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTGCAGGTCGGTCTCTGCGGTAGAGTCTtcagc                                              >  1:92348‑M2/66‑141 (MQ=255)
                                                                             acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                             >  1:113925‑M2/65‑143 (MQ=255)
                                                                                      aaaagggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                    <  2:768167‑M2/88‑1 (MQ=255)
                                                                                       aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTAAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                   <  1:86244‑M2/89‑1 (MQ=255)
                                                                                        aaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcggcCGTCCCCTGCATTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc                                  <  1:858276‑M2/90‑1 (MQ=255)
                                                                                         aaggcgccccaccagtcgccgtaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCg                                 <  2:499396‑M2/91‑1 (MQ=255)
                                                                                            gcgactcatcagtcgtcttaaagagctggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCTTCTTCGGTCATGACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaa                              <  2:415783‑M2/94‑1 (MQ=255)
                                                                                              gacgcagcagtcgcattaaaaatgagttggcccgcgccgcctcctgcCGTCCCCTGCACTTCAATGATGCGCACGTCATCGGTCAGCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc                            <  1:340178‑M2/96‑1 (MQ=255)
                                                                                               cctgatcaggcgcgtgaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCAGCACTACGTTCATGTCGGTCTCTGCGGCAGGGTCTTCAACGTATTCCAGATCGCAAAcc                           <  2:447776‑M2/97‑1 (MQ=255)
                                                                                                ctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCGCTACGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCGCGATCgcacacgg                          >  1:180942‑M2/46‑141 (MQ=255)
                                                                                                   atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCAGAGCGCAAACCGctg                       >  1:27649‑M2/43‑142 (MQ=255)
                                                                                                   atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                       >  1:734337‑M2/43‑143 (MQ=255)
                                                                                                       gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCACGTCGGTCTCTGCGCCAGAGTCTTCAACGGATTCCAGCTCGCAAACCGCTACGcc                   >  2:448715‑M2/39‑143 (MQ=255)
                                                                                                        tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTGCAATGGTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                  <  1:33285‑M2/106‑1 (MQ=255)
                                                                                                           tctgaaaaatcagtttgcgagcgccgtcttcggcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc               <  1:682088‑M2/109‑1 (MQ=255)
                                                                                                             ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac             >  1:170425‑M2/33‑143 (MQ=255)
                                                                                                             ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATACGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTATTCAACGTAGTCCAGATCGCAAACCGCTTCGCAGGTcac             >  1:274264‑M2/33‑143 (MQ=255)
                                                                                                               aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa           <  1:289650‑M2/113‑1 (MQ=255)
                                                                                                                   atcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCCAACCGCTTCGCCGTTCACAGTTcc       >  1:885164‑M2/27‑143 (MQ=255)
                                                                                                                   atcagtttgccagcgccgacttctgcAGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCGTCAACGTATTCCAGATCGCAAACCGCATCGACGTTCACAAGTcc       >  2:20827‑M2/27‑143 (MQ=255)
                                                                                                                      agttgtccagggccgccgtctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTGCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc    <  2:243563‑M2/120‑1 (MQ=255)
                                                                                                                        tttgccaacgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTGCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTGCACAAGTCCGACAg  >  1:532294‑M2/22‑143 (MQ=255)
                                                                                                                                             |                                                                                                                         
CAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAG  >  NC_000913/3815800‑3816062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: