Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 700,597 IS1 (–) +9 bp coding (990‑998/1221 nt) nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)40 (0.810) 36/284 0.4 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 700605 0 (0.000)coding (990/1221 nt) nagC N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
* ? NC_000913 = 258675NA (NA)61 (1.230) 49/284 0.0 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 700597 = 0 (0.000)coding (998/1221 nt) nagC N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

Only 100 of 101 total aligned reads displayed.

CTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCT  >  NC_000913/700464‑700747
                                                                                                                                             |                                                                                                                                              
cTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGg                                                                                                                                               >  1:266590‑M2/1‑142 (MQ=255)
 ccggcggtgcttttgccgttacgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGAt                                                                                                                                              <  1:783775‑M2/11‑1 (MQ=255)
   aGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggta                                                                                                                                            <  1:562314‑M2/143‑5 (MQ=255)
        tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagcccctggagcacctcaaaaacaccatcatacactaaatcagtcagttgacagcatcaccAATAAGTTGATAGCAATg                                                                                                                                       >  1:735205‑M2/126‑143 (MQ=255)
        tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATg                                                                                                                                       >  1:23058‑M2/126‑143 (MQ=255)
          cttctgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGc                                                                                                                                     <  1:23559‑M2/20‑1 (MQ=255)
              ccGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaac                                                                                                                                 >  1:461549‑M2/1‑128 (MQ=255)
               cGGCAGATTAGTGCGAAACGCCTTTAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGAGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGCTGggaaaagaccacaatt                                                                                                                                <  2:307461‑M2/143‑17 (MQ=255)
                ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaaccgaagccactggagcccctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGt                                                                                                                               >  1:280580‑M2/118‑143 (MQ=255)
                 cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcacaAATAAGTTGATAGCAATGGCGATGGtt                                                                                                                              >  1:479921‑M2/117‑143 (MQ=255)
                 cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGgtg                                                                                                                              >  2:856008‑M2/117‑142 (MQ=255)
                 cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgcaggtaccaccAATAAGTTGATAGCAATGGCGATGGtt                                                                                                                              >  1:854313‑M2/117‑143 (MQ=255)
                         accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagatggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAg                                                                                                                      >  1:645594‑M2/109‑143 (MQ=255)
                          tGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATACCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtg                                                                                                                     <  2:726372‑M2/143‑28 (MQ=255)
                           caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggcgcacctcaaaaacacgctcatacaccaaatccgtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGAt                                                                                                                    >  2:435302‑M2/107‑143 (MQ=255)
                           caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGAt                                                                                                                    <  1:329576‑M2/37‑1 (MQ=255)
                            cGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagggtt                                                                                                                   <  2:87234‑M2/143‑30 (MQ=255)
                                aCGCCTTCATCGCCTGTGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttat                                                                                                               >  1:710665‑M2/1‑110 (MQ=255)
                                 gtcagtagctgaacaggagggacagctgaaataaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATgacaac                                                                                                              >  2:793365‑M2/101‑143 (MQ=255)
                                  acagtagctgaacaggaggggcagctgctagacacagaagccactggagcacctcaacaacaccatcatacactaaatcggtaagttggcagcatcaccAATAAGTTGATAGCATTGGCGATTGTTTTACCCAGATGAcgacc                                                                                                             <  2:714828‑M2/44‑1 (MQ=255)
                                   cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGAcgaccg                                                                                                            >  2:304253‑M2/99‑143 (MQ=255)
                                    cTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttc                                                                                                           <  2:690183‑M2/143‑38 (MQ=255)
                                       cAGTGCCTGGGTATGAATTGAGCTTTCGATAGCAGGGAGCAGCAGTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTGTTGCGGATTAAATAAGTTGggtaatgactccaacttatggatagtgttttatgttcaga                                                                                                        >  2:83096‑M2/1‑103 (MQ=255)
                                         ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATAc                                                                                                      >  1:596557‑M2/93‑143 (MQ=255)
                                          cgcCTGTGTATTATTGCCGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                                     >  2:159473‑M2/1‑100 (MQ=255)
                                            aacaggagggacagctgatagaaacagaagccactgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTTCTCAGATGACGACCGACATTCTCa                                                                                                   >  1:270078‑M2/90‑143 (MQ=255)
                                             cTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTAACCGGCAATAAAAATTTTTTGCGGATTAAATAAGTTGtgtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                                  <  2:706024‑M2/143‑47 (MQ=255)
                                              caggagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAAt                                                                                                 <  1:718777‑M2/56‑1 (MQ=255)
                                               aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGAAGGTTTTACCCAGATGACGACCGACATACTCAAtt                                                                                                >  2:317387‑M2/87‑143 (MQ=255)
                                                 gagcgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtcagtcggcagcatcaccAATAAGTTGATAGCAATGGCGACGGTTTTACCCAGATGACGACCGACATACTCAATTAc                                                                                              >  2:158118‑M2/85‑143 (MQ=255)
                                                 gaaggatagcggatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGCCATacccaaatcc                                                                                              >  2:692355‑M2/85‑139 (MQ=255)
                                                   gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACtt                                                                                            <  2:350393‑M2/61‑1 (MQ=255)
                                                    ggacagctgatagaaacagaagccagtggagcacctcaaaaacaccatcatacactaaatcagtaagtgggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTc                                                                                           <  1:364778‑M2/62‑1 (MQ=255)
                                                      acagctgatagaaacagaagccactggcgcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccACTAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACCTCCg                                                                                         >  2:321762‑M2/80‑143 (MQ=255)
                                                        tGCAGCTTTCAATAGCAGGGAGCAGTACTTTATCGGTTTCGTTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                       >  1:597562‑M2/1‑86 (MQ=255)
                                                        tGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                       >  1:64505‑M2/1‑86 (MQ=255)
                                                        agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGAc                                                                                       >  1:112827‑M2/78‑143 (MQ=255)
                                                          ctgcgggaaacggaagccactggagcacctcaaaaacaccatcatacactaagtcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGc                                                                                     <  2:39211‑M2/68‑1 (MQ=255)
                                                           tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGcc                                                                                    >  1:146858‑M2/75‑143 (MQ=255)
                                                           aGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttgttgatagtgttctatgttcagataatgcccgatgcctttctc                                                                                    <  2:338094‑M2/143‑61 (MQ=255)
                                                           aGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                    >  1:794777‑M2/1‑83 (MQ=255)
                                                               agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGAc                                                                                >  2:719694‑M2/71‑143 (MQ=255)
                                                                 aaacagaagccactggagcacctcaaaaacaccatcagacactaaatcagtaggttggcagcatagccAATATGTTGATAGCAATGGCGATGGTTTTAGCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTa                                                                              >  2:643587‑M2/69‑143 (MQ=255)
                                                                    tAGCAGGCAGCAGCACCTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                           >  1:348154‑M2/1‑74 (MQ=255)
                                                                     agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGc                                                                          >  2:553296‑M2/65‑143 (MQ=255)
                                                                       tagcgactgggcctcctcaagacctccatcatatactaaatcagtaagtttgcagcatccccCATAAGTTGCTAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACGCAATTACTTCCGACGCCAGACTATCGCCt                                                                        <  2:762130‑M2/81‑1 (MQ=255)
                                                                       cAGGGAGCAGCACTTTTTCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                        >  2:675518‑M2/1‑71 (MQ=255)
                                                                       cAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                        <  1:863273‑M2/143‑73 (MQ=255)
                                                                         gggAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttaggttcggataatgcccgatgacttggtggtgcagctgcgggg                                                                      <  1:31268‑M2/143‑75 (MQ=255)
                                                                         gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCcttc                                                                      >  1:199876‑M2/61‑142 (MQ=255)
                                                                         gcaactggagcacctcaaaaacaccatcatacactaaaccagtaagttggcaccatcaccCATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTCTCGCcttc                                                                      >  2:868172‑M2/61‑142 (MQ=255)
                                                                          cgattgtagcacctcaaaaacaccctcatcctctaaatcagtaagttggcagcatccccAATAAGTTGATAGCAATTGCGATGGTTTTGCCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTg                                                                     <  2:262349‑M2/84‑1 (MQ=255)
                                                                            actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCgttgtt                                                                   >  1:368898‑M2/58‑143 (MQ=255)
                                                                            accagcactTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCTGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                                   >  2:666790‑M2/3‑66 (MQ=255)
                                                                             ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTtgtgc                                                                  >  2:576239‑M2/57‑141 (MQ=255)
                                                                               ggagcccctcacaaacaccaccacacactagatcagcaagttggcagcatcaccAATAAGTGGATAGCAACGGCGATGGTTTTACCCAGATGACGAGCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTcgc                                                                <  1:592916‑M2/89‑1 (MQ=255)
                                                                               agcaCTTTACCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgacgccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                >  1:834048‑M2/1‑63 (MQ=255)
                                                                                     cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCttt                                                          >  2:822811‑M2/49‑143 (MQ=255)
                                                                                      ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGCTTTACCCAGATGGCGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTCCGCGGCTCTg                                                         >  2:379913‑M2/48‑143 (MQ=255)
                                                                                       tcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGc                                                        <  2:163907‑M2/97‑1 (MQ=255)
                                                                                       gcaaaaacaccatcatacacgaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTGTTACCCAGAGGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGc                                                        <  1:230897‑M2/97‑1 (MQ=255)
                                                                                        caaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCCTTGTTCGCGGCTTTGCa                                                       >  2:634554‑M2/46‑143 (MQ=255)
                                                                                           gCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcg                                                    <  1:599398‑M2/143‑93 (MQ=255)
                                                                                            cTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                                   <  1:905143‑M2/143‑94 (MQ=255)
                                                                                            cTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaaaggctccaacctagtgatagtgttttatgtgcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                                   >  1:565508‑M2/1‑50 (MQ=255)
                                                                                               cGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                >  2:697389‑M2/1‑47 (MQ=255)
                                                                                               cGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagagaatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                >  1:22766‑M2/1‑47 (MQ=255)
                                                                                                   tcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGa                                            <  1:235086‑M2/109‑1 (MQ=255)
                                                                                                    cattcacttattctgtaagttggtagcatcagcAATAAGATGAGAGCAATGGCGATGGGTTGACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGAt                                           <  1:221805‑M2/110‑1 (MQ=255)
                                                                                                    catacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGAt                                           <  1:131926‑M2/110‑1 (MQ=255)
                                                                                                     atacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTGTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCACCTTTGTTCGCGGCTTTGCAGATAGTTATGatc                                          >  1:276096‑M2/33‑142 (MQ=255)
                                                                                                     atacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTATACCCAGCTGACGAACGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGCTCGCGGCTTTGCgggtagttcgactg                                          >  2:459103‑M2/33‑137 (MQ=255)
                                                                                                         actaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATAGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCACCGCCAGACTATCGCCTTGGTTCGCGGCTTTGCAGAGGGTTTTGATtgtca                                      >  2:515255‑M2/29‑141 (MQ=255)
                                                                                                         aCCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagagattaatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagcacgaccgctactgccagcccagc                                      <  2:873429‑M2/143‑107 (MQ=255)
                                                                                                           cGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg                                    <  1:290606‑M2/143‑109 (MQ=255)
                                                                                                            ggCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                                   >  1:726372‑M2/1‑34 (MQ=255)
                                                                                                            ggCAATAACAATTTTTTGCGGATTAAATAAGTTAggaaacgagttcaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                                   >  1:855730‑M2/1‑34 (MQ=255)
                                                                                                             aatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAgtc                                  <  2:843369‑M2/119‑1 (MQ=255)
                                                                                                                cagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAgtcgtc                               <  1:757139‑M2/122‑1 (MQ=255)
                                                                                                                 agcaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTcc                              <  1:304253‑M2/123‑1 (MQ=255)
                                                                                                                   taagttggcagcatcaccAATGCGGGGATAGCCAGGGCGATGGTGTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAg                            <  1:522008‑M2/125‑1 (MQ=255)
                                                                                                                   taagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAg                            <  1:227345‑M2/125‑1 (MQ=255)
                                                                                                                   taagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAg                            >  2:854839‑M2/19‑143 (MQ=255)
                                                                                                                    cAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                           >  2:807475‑M2/1‑26 (MQ=255)
                                                                                                                    cAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatgttgagaacgacagcgacttccgtaccagccgtgccaggtg                           <  2:254789‑M2/143‑118 (MQ=255)
                                                                                                                     ggttggcagcatcaccAATACTGTGAGAGCAATCGCGATGGTTTTACCCAGATGACGACCGACATACTCAAGTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCg                          <  2:94217‑M2/127‑1 (MQ=255)
                                                                                                                       ttggcagcatctccAATTAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCGAGGCTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATTGTGCAGTCGTACAGAGGc                        <  2:369500‑M2/129‑1 (MQ=255)
                                                                                                                        tttgtGCGGATTAAATAAGATGtgtaatgactacaacttagcgagagtgttttatgttcagataatgcccgattcctttgtcatgcggctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                       >  1:147016‑M2/1‑22 (MQ=255)
                                                                                                                             gcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCATATTACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCgg                  <  1:856008‑M2/135‑1 (MQ=255)
                                                                                                                              cGGCTTAAATAAGTTGggcaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  1:62161‑M2/1‑16 (MQ=255)
                                                                                                                                gATTAAATAAGTTGggtaatgtctccaacttattgatagtgttttatggtcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt               >  1:468788‑M2/1‑14 (MQ=255)
                                                                                                                                gATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtaccagccgtcccaggtgctacctcagatt               <  2:571677‑M2/143‑130 (MQ=255)
                                                                                                                                     cgtgttgtgggtaatgactccaacttattgatagtgttttatgtgcagataatgctcgatgactttgtcatgcagcttcgccgattttgataacgacagtgacttccgtcccagccgtgccaggtgctgcctcagattcaggt          >  2:797067‑M2/8‑9 (MQ=255)
                                                                                                                                     aaTAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactctgtcatgcagctccaccgattttgcgaacgacagcgacttccgcccacaccgtgccaggtgctgccccagattccggc          <  2:420088‑M2/143‑135 (MQ=255)
                                                                                                                                       tAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGCTTTGATGGTGCAGTCGTCCAGCGGCCCGCGGCTCTGGTAGc        >  2:205824/1‑143 (MQ=255)
                                                                                                                                         aGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg      >  1:291347‑M2/1‑5 (MQ=255)
                                                                                                                                          gTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTCGCCCt     >  1:53491/1‑143 (MQ=255)
                                                                                                                                          gTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCGTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCt     <  2:596557/143‑1 (MQ=255)
                                                                                                                                           ttGggtaaggactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctgccccgattttgagaacgacagcgacttccgtcccagccgcgccacgtgctgcatcagctccaggtgacgcc    <  2:78366‑M2/143‑141 (MQ=255)
                                                                                                                                             gATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCt  >  1:83250/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                              
CTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCT  >  NC_000913/700464‑700747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.